Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.6e-236 822.4 424 100.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.1e-167 592.8 388 80.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.6e-162 575.9 401 76.6
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.2e-144 515.4 384 71.9
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 5.7e-141 505.0 391 69.3
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.8e-116 422.9 383 62.1
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.7e-116 422.5 385 62.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 5.5e-112 408.7 361 65.1
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 6.1e-111 405.2 385 59.0
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 6.1e-111 405.2 387 61.0
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 2.7e-106 389.8 390 58.2
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.3e-105 386.7 417 55.2
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.5e-104 384.0 389 55.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 4.2e-104 382.5 389 57.1
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 5.5e-104 382.1 379 57.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 7.2e-104 381.7 417 54.2
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.5e-101 374.0 414 54.1
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.4e-101 372.5 410 54.1
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.7e-100 369.4 398 55.3
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.1e-99 365.9 402 53.0
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 7.0e-99 365.2 411 53.3
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.3e-97 360.1 397 53.4
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.5e-96 357.5 392 55.1
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.8e-94 350.5 398 54.3
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 2.3e-94 350.1 402 53.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.3e-94 350.1 401 54.4
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.3e-94 350.1 387 53.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 5.2e-94 349.0 401 54.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 5.2e-94 349.0 390 53.1
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.4e-93 346.3 414 49.0
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.8e-93 345.5 403 53.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 8.3e-92 341.7 379 55.7
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.4e-91 340.9 395 52.2
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 3.2e-91 339.7 388 52.1
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 5.4e-91 339.0 384 55.2
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.0e-89 334.7 435 49.0
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.6e-87 327.4 392 49.2
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.1e-87 327.0 394 50.3
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 3.6e-87 326.2 402 51.2
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 6.2e-87 325.5 416 49.8
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 8.0e-87 325.1 400 48.2
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.3e-84 317.8 390 49.5
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.3e-84 317.8 412 49.3
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.9e-84 316.6 359 53.8
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.4e-84 315.5 349 55.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.1e-83 314.7 354 52.3
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 5.4e-83 312.4 387 52.2
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 5.4e-83 312.4 358 54.2
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 5.4e-83 312.4 407 48.2
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 9.2e-83 311.6 390 47.7
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 7.8e-82 308.5 341 52.8
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.8e-82 308.5 390 47.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.7e-81 307.4 413 47.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 3.9e-81 306.2 418 47.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 5.1e-81 305.8 414 47.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 6.6e-81 305.4 416 46.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.5e-80 304.3 307 56.7
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.3e-80 303.1 418 45.5
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 8.1e-79 298.5 398 47.7
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.8e-78 297.4 395 47.6
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 5.2e-78 295.8 364 48.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 6.8e-78 295.4 388 48.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 9.9e-77 291.6 352 48.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.7e-76 290.8 417 45.6
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 3.7e-76 289.7 353 48.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.1e-75 286.2 243 63.4
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.1e-74 283.9 402 44.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 6.0e-74 282.3 437 43.0
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 5.1e-73 279.3 392 45.4
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.1e-72 278.1 414 45.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.9e-72 277.3 381 48.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 9.5e-72 275.0 215 66.5
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-71 274.6 349 45.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-71 274.2 256 56.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.6e-71 274.2 217 67.3
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.1e-70 270.0 366 46.2
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.0e-69 267.3 362 43.6
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 7.6e-69 265.4 362 45.9
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.9e-68 263.5 389 44.0
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.4e-67 261.2 390 43.8
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.9e-67 260.8 397 44.3
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 3.2e-67 260.0 432 43.3
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 7.1e-67 258.8 352 47.2
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.1e-66 257.3 434 41.5
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 6.0e-66 255.8 391 43.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 6.0e-66 255.8 359 45.7
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 6.0e-66 255.8 245 57.6
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.8e-66 255.4 332 45.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.0e-65 253.4 445 40.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.1e-63 247.3 323 45.5
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.5e-61 241.1 249 53.4
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.6e-61 240.4 407 41.5
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.7e-60 237.7 356 44.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.7e-60 237.7 356 44.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.7e-60 237.7 356 44.7
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.1e-59 235.0 354 42.1
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 3.2e-59 233.4 245 54.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.1e-58 230.7 391 40.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.7e-58 230.3 254 52.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 5.1e-57 226.1 245 53.5
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 7.3e-56 222.2 186 63.4
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 7.3e-56 222.2 264 49.6
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 7.3e-56 222.2 278 48.9
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.6e-55 221.1 332 44.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.8e-54 217.6 383 39.4
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.8e-54 217.6 183 62.8
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 4.0e-54 216.5 343 41.1
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 5.3e-54 216.1 375 40.0
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.1e-51 208.4 182 62.1
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.2e-51 206.5 182 60.4
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 7.1e-51 205.7 381 36.5
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.2e-50 204.9 254 45.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.6e-50 204.5 354 40.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.1e-49 199.5 285 46.7
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.5e-48 198.0 224 51.8
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 9.6e-48 195.3 397 38.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.8e-46 191.0 255 46.7
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 3.1e-46 190.3 244 44.3
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 3.1e-46 190.3 416 36.1
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.6e-45 187.2 346 39.9
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 3.8e-44 183.3 276 42.8
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.2e-43 179.9 203 53.7
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-41 174.9 245 42.0
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.8e-39 166.4 277 42.6
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.5e-37 161.4 243 46.9
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 6.7e-33 146.0 170 49.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 3.1e-30 137.1 195 44.6
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 5.3e-30 136.3 120 60.0
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.7e-28 131.3 210 38.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 2.1e-26 124.4 93 73.1
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.7e-26 124.0 220 37.3
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 6.1e-26 122.9 196 38.3
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.8e-25 121.3 83 74.7
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 3.3e-24 117.1 112 58.0
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 8.2e-23 112.5 242 36.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 8.2e-23 112.5 118 55.1
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 8.2e-23 112.5 118 55.1
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 3.1e-22 110.5 90 67.8
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 4.5e-21 106.7 214 36.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.7e-20 104.8 80 66.2
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.9e-19 101.3 83 62.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.3e-17 94.4 86 62.8
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.1e-16 92.0 229 32.3
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.2e-13 82.0 306 27.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.7e-12 78.2 66 57.6
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.2e-12 77.8 48 72.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.2e-11 73.6 55 63.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.0e-09 68.9 81 46.9
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.4e-09 68.6 101 37.6
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 5.2e-09 66.6 82 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 8.8e-09 65.9 152 32.9
Haze_07157 Corylus avellana HOM05D004411 ORTHO05D005569 1.4e-06 58.5 115 44.3
MCO11G525 Micromonas commoda HOM05D004411 ORTHO05D005569 1.4e-06 58.5 214 24.8
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 9.1e-06 55.8 166 29.5


User provided reference genes

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