Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 5.4e-153 544.3 272 100.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.5e-131 473.0 272 88.2
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.9e-130 468.8 272 87.9
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.4e-129 466.5 272 86.0
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 4.2e-129 464.9 272 85.7
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 7.1e-129 464.2 272 85.7
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 7.1e-129 464.2 272 86.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 6.0e-128 461.1 272 85.3
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.3e-126 454.9 272 82.4
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.1e-125 452.6 268 87.3
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.8e-125 452.2 272 81.6
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.8e-125 452.2 272 81.6
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.7e-125 451.8 272 81.6
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 6.2e-125 451.1 272 82.4
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-124 450.3 272 80.9
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.8e-124 449.5 267 84.3
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 2.4e-124 449.1 270 83.3
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.0e-124 448.4 266 84.2
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-123 446.8 267 83.9
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-123 446.8 267 83.9
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.2e-123 446.8 272 81.6
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.4e-123 445.3 267 82.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 7.6e-123 444.1 270 81.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.2e-122 442.6 270 81.1
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.2e-122 442.6 271 81.9
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.8e-122 441.8 270 81.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 3.8e-122 441.8 272 81.6
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 6.5e-122 441.0 267 82.0
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-121 440.3 271 83.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.4e-121 439.9 264 81.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.4e-121 439.9 270 81.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.9e-121 439.5 271 81.5
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.9e-121 439.5 272 82.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.5e-121 439.1 272 81.2
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 3.2e-121 438.7 272 80.9
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 4.2e-121 438.3 264 83.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 4.2e-121 438.3 270 80.7
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 5.5e-121 438.0 264 83.7
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 7.1e-121 437.6 266 83.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 9.3e-121 437.2 267 82.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 9.3e-121 437.2 266 81.6
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.2e-120 436.8 278 79.1
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.6e-120 436.4 268 81.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.6e-120 436.4 267 81.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.6e-120 436.4 267 82.4
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 2.1e-120 436.0 270 80.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 6.0e-120 434.5 268 81.7
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.8e-119 433.0 266 80.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.8e-119 433.0 268 82.1
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.3e-119 432.6 264 81.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 3.0e-119 432.2 264 81.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.1e-119 431.4 266 80.8
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 5.1e-119 431.4 268 81.7
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 8.7e-119 430.6 267 80.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.1e-118 430.3 266 79.7
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.5e-118 429.9 264 82.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.9e-118 429.5 265 81.1
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.9e-118 429.5 265 81.1
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 4.3e-118 428.3 270 78.5
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 5.7e-118 427.9 265 80.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 5.7e-118 427.9 271 79.0
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 9.6e-118 427.2 272 79.4
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.6e-117 426.4 269 77.3
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.1e-117 426.0 270 78.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.8e-117 425.6 264 81.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 6.3e-117 424.5 275 77.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 8.2e-117 424.1 270 76.3
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 8.2e-117 424.1 270 76.3
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.1e-116 423.7 290 76.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.4e-116 423.3 270 77.4
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.4e-116 422.5 268 79.1
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.1e-116 422.2 265 79.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.2e-115 420.2 270 76.7
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-115 420.2 270 76.7
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.2e-115 420.2 270 76.3
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.5e-115 419.9 313 71.6
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-115 419.5 270 76.7
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-115 419.5 270 76.7
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.6e-115 419.1 270 75.9
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.4e-115 418.7 270 76.3
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 3.4e-115 418.7 256 79.7
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 7.6e-115 417.5 270 76.3
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 7.6e-115 417.5 270 76.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 8.4e-114 414.1 265 79.2
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.4e-114 414.1 267 76.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.1e-113 413.7 270 75.9
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.9e-113 412.9 252 80.6
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.1e-112 409.5 272 75.4
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.0e-111 407.1 317 66.2
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 5.7e-110 401.4 268 76.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 9.7e-110 400.6 379 58.0
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 5.3e-108 394.8 277 75.1
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.3e-106 390.2 267 73.8
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.1e-105 387.1 267 73.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 5.5e-105 384.8 264 70.1
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.4e-100 370.2 262 67.9
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.6e-99 365.9 242 73.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.4e-99 365.5 263 70.3
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 5.0e-98 361.7 259 71.4
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 3.2e-97 359.0 233 77.3
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.2e-96 357.1 271 67.2
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.1e-96 356.3 270 68.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 3.1e-92 342.4 257 67.7
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 4.1e-92 342.0 271 66.4
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-89 334.0 187 85.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.2e-89 332.4 258 64.3
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.5e-86 321.2 214 77.6
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.8e-85 318.5 325 55.1
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 3.5e-83 312.4 188 81.4
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.7e-82 310.1 203 75.4
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.9e-73 280.0 155 87.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 4.2e-73 278.9 229 62.9
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.6e-72 275.8 260 51.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-68 262.3 204 65.2
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.6e-64 250.4 152 77.6
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 2.3e-63 246.5 261 47.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.8e-60 236.9 217 58.5
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.8e-60 236.9 231 58.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.4e-52 210.7 265 49.1
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.7e-51 206.5 150 73.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.6e-48 196.1 99 94.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.4e-46 189.1 140 71.4
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.9e-45 186.4 264 42.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 3.1e-39 166.4 153 62.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.7e-37 160.6 114 70.2
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.9e-37 159.8 116 69.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-35 153.7 119 63.9
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.0e-34 151.4 273 31.9
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.0e-34 151.4 119 66.4
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 4.0e-31 139.4 125 59.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.6e-19 100.9 123 47.2
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.1e-18 95.9 58 75.9
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.6e-16 89.7 137 44.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 4.5e-14 82.8 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.3e-13 81.3 55 70.9
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.9e-13 80.1 55 72.7
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.6e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 4.0e-07 59.7 55 61.8


User provided reference genes

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