Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 2.1e-79 298.9 147 100.0
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 5.0e-60 234.6 139 85.6
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.2e-58 229.9 145 82.1
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.2e-58 229.9 145 82.1
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 8.2e-55 217.2 144 79.2
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.7e-52 209.5 127 84.3
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.7e-48 194.5 144 70.1
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.7e-47 193.0 145 72.4
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.1e-46 190.3 149 71.1
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 7.0e-46 187.6 144 68.8
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 1.3e-44 183.3 145 69.7
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.2e-44 182.6 141 71.6
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 2.9e-44 182.2 145 69.0
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 2.9e-44 182.2 145 69.0
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 6.5e-44 181.0 145 66.2
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 6.5e-44 181.0 145 69.7
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 6.5e-44 181.0 145 71.7
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.1e-43 180.3 144 67.4
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 1.4e-43 179.9 145 69.0
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 5.5e-43 177.9 144 69.4
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 5.5e-43 177.9 144 66.0
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 9.4e-43 177.2 133 72.9
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 4.7e-42 174.9 142 69.0
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 8.0e-42 174.1 145 66.2
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.8e-41 172.9 144 65.3
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 6.7e-41 171.0 143 64.3
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 6.7e-41 171.0 138 71.0
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.1e-40 170.2 145 66.9
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.0e-40 169.5 142 66.2
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 5.7e-40 167.9 149 63.1
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 7.4e-40 167.5 144 62.5
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 7.4e-40 167.5 142 66.2
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 9.7e-40 167.2 144 66.0
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 9.7e-40 167.2 147 63.9
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.7e-39 166.4 142 64.1
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 2.2e-39 166.0 143 62.9
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 3.7e-39 165.2 145 62.8
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 4.8e-39 164.9 138 64.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 4.8e-39 164.9 149 62.4
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 4.8e-39 164.9 140 62.9
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-38 163.7 146 63.7
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-38 163.7 146 63.7
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 2.4e-38 162.5 128 70.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 4.1e-38 161.8 143 62.9
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 7.0e-38 161.0 143 61.5
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 7.0e-38 161.0 146 56.2
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 9.1e-38 160.6 142 65.5
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 2.0e-37 159.5 146 60.3
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.0e-37 159.5 146 60.3
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 2.0e-37 159.5 146 61.6
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.6e-37 159.1 145 62.8
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 2.6e-37 159.1 143 64.3
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.5e-37 158.7 143 61.5
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 3.5e-37 158.7 148 61.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 4.5e-37 158.3 137 61.3
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 4.5e-37 158.3 145 58.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.9e-37 157.9 146 60.3
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 5.9e-37 157.9 135 65.9
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 5.9e-37 157.9 150 59.3
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 7.7e-37 157.5 143 62.2
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 7.7e-37 157.5 140 60.0
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 1.0e-36 157.1 144 61.1
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.3e-36 156.8 144 62.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.9e-36 155.6 142 57.7
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.8e-36 155.2 145 64.1
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 5.0e-36 154.8 143 60.1
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 5.0e-36 154.8 127 70.9
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 5.0e-36 154.8 144 62.5
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 8.5e-36 154.1 136 64.0
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.5e-35 153.3 145 60.7
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.5e-35 153.3 141 61.0
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 3.2e-35 152.1 142 58.5
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 4.2e-35 151.8 143 60.1
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 5.5e-35 151.4 140 57.9
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 7.2e-35 151.0 145 57.2
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 4.7e-34 148.3 144 60.4
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.0e-33 147.1 144 59.0
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.0e-33 147.1 145 60.7
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.4e-33 146.7 133 63.2
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.8e-33 146.4 143 57.3
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 4.0e-33 145.2 134 62.7
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 6.7e-33 144.4 146 57.5
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 8.8e-33 144.1 140 55.7
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.2e-32 143.7 145 59.3
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.2e-32 143.7 145 57.2
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.5e-32 143.3 146 56.8
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 2.0e-32 142.9 143 58.0
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 3.3e-32 142.1 144 56.9
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 3.3e-32 142.1 146 56.8
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 3.3e-32 142.1 140 58.6
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 4.4e-32 141.7 131 61.8
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.7e-32 141.4 127 61.4
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.7e-31 139.8 144 56.2
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.7e-31 138.7 127 62.2
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.7e-31 138.7 127 62.2
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 3.7e-31 138.7 125 63.2
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 6.3e-31 137.9 135 57.8
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.1e-30 137.1 143 53.8
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 3.1e-30 135.6 143 54.5
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 4.1e-30 135.2 132 59.1
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 9.1e-30 134.0 129 61.2
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 1.2e-29 133.7 124 58.1
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 2.0e-29 132.9 125 60.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 4.5e-29 131.7 142 52.8
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 7.7e-29 131.0 142 52.1
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 3.8e-28 128.6 126 58.7
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.5e-27 125.9 125 57.6
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 5.5e-27 124.8 147 51.7
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 9.4e-27 124.0 93 75.3
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.2e-26 123.6 130 57.7
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.6e-26 123.2 87 70.1
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 4.7e-26 121.7 130 57.7
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 6.8e-25 117.9 129 55.8
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 8.8e-25 117.5 141 48.2
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.2e-24 117.1 139 50.4
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.2e-24 117.1 124 58.1
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.5e-24 116.7 126 54.8
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 7.5e-24 114.4 90 67.8
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 3.5e-21 105.5 146 44.5
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.3e-20 102.8 148 44.6
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 3.8e-20 102.1 149 46.3
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 2.8e-18 95.9 95 56.8
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 8.0e-18 94.4 129 50.4
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 2.6e-16 89.4 151 41.1
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 1.8e-14 83.2 98 55.1
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 3.1e-14 82.4 98 55.1
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.0e-09 67.4 123 41.5
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 5.2e-09 65.1 131 39.7
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.3e-07 60.5 46 60.9
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 2.9e-07 59.3 96 43.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 6.4e-07 58.2 57 52.6
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 4.1e-06 55.5 108 38.9


User provided reference genes

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