Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 0.0e+00 1228.8 740 100.0
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.8e-225 785.4 726 76.4
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.5e-225 784.6 727 75.4
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 7.7e-109 399.1 569 50.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.0e-108 398.7 667 46.5
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.0e-108 398.7 667 46.5
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 7.7e-101 372.5 652 45.6
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 1.3e-76 292.0 656 42.5
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 4.2e-75 287.0 677 40.2
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.7e-68 265.0 769 45.3
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 5.0e-68 263.5 637 40.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 6.6e-68 263.1 788 37.1
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 6.1e-66 256.5 645 40.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.4e-64 250.8 631 38.2
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.3e-60 238.8 703 35.3
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 8.6e-60 236.1 670 35.7
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 2.5e-59 234.6 639 36.3
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 3.3e-59 234.2 630 36.8
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.6e-58 231.9 784 38.8
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 8.9e-57 226.1 764 41.5
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.9e-57 226.1 778 38.9
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.2e-56 225.7 672 35.9
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.8e-56 222.6 633 35.4
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 9.8e-56 222.6 674 35.2
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 2.0e-53 214.9 656 35.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.0e-52 212.6 693 34.5
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.6e-50 205.3 686 34.1
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.4e-49 202.2 660 33.2
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.3e-49 201.4 653 33.2
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.5e-48 196.4 636 33.5
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-47 194.1 639 34.3
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.1e-45 188.3 626 33.7
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 3.5e-45 187.6 700 32.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.3e-44 185.7 695 32.8
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.7e-44 185.3 624 33.8
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 3.9e-44 184.1 678 32.7
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 6.6e-44 183.3 650 34.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.9e-43 181.8 719 30.9
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 6.2e-42 176.8 643 32.3
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 8.1e-42 176.4 608 32.9
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.3e-41 174.9 764 36.6
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 3.1e-41 174.5 636 33.2
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 5.8e-40 170.2 276 47.8
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 7.5e-40 169.9 679 32.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.7e-39 168.7 792 34.6
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.7e-39 168.7 641 34.5
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.4e-39 166.8 556 32.2
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 1.4e-38 165.6 787 37.2
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-38 165.2 662 30.2
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.9e-38 165.2 779 37.1
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 2.4e-38 164.9 343 44.0
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.1e-37 161.8 377 38.7
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.3e-36 159.1 627 32.7
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.7e-36 158.7 739 30.4
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.3e-36 158.3 735 38.9
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 6.6e-36 156.8 639 30.8
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.9e-35 155.2 687 30.3
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 4.3e-35 154.1 630 32.2
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 2.8e-34 151.4 664 32.4
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 6.2e-34 150.2 625 32.3
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 6.8e-33 146.7 755 35.4
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.6e-32 144.8 647 30.0
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 4.4e-32 144.1 661 31.0
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 5.8e-32 143.7 614 31.4
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 7.6e-32 143.3 720 29.4
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 9.9e-32 142.9 642 30.7
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.7e-31 142.1 747 29.6
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 2.9e-31 141.4 382 38.5
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 6.4e-31 140.2 421 34.7
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 8.4e-31 139.8 616 29.4
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.1e-30 139.4 740 33.5
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 5.4e-30 137.1 650 30.6
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.5e-29 134.4 623 30.3
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.3e-28 131.7 672 29.5
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.0e-28 131.3 360 36.9
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.0e-28 131.3 360 36.9
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 3.9e-28 131.0 655 30.7
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 7.3e-27 126.7 739 28.8
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 9.6e-27 126.3 759 36.0
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.6e-26 125.6 622 30.9
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 8.1e-26 123.2 659 28.2
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.6e-24 118.2 164 50.6
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 8.4e-23 113.2 687 27.8
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.9e-22 112.1 687 28.7
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.2e-21 109.4 607 27.8
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 1.6e-21 109.0 689 27.6
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.5e-21 107.8 638 28.4
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 4.3e-19 100.9 725 27.0
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 4.5e-16 90.9 353 34.3
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.9e-14 85.5 652 25.3
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 2.4e-14 85.1 490 32.7
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.2e-14 84.7 402 29.4
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.2e-13 82.8 629 26.2
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 2.1e-13 82.0 612 27.0
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 5.3e-09 67.4 645 25.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.2e-08 66.2 700 26.4
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 3.4e-08 64.7 349 33.0
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.5e-06 58.5 356 30.9
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 4.2e-06 57.8 175 37.7


User provided reference genes

Program Settings