Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.0e-308 1061.6 534 100.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 6.1e-225 784.3 533 76.0
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 3.3e-223 778.5 534 75.1
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.6e-199 699.1 534 70.0
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.8e-192 676.4 535 66.5
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 7.5e-191 671.0 532 66.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 4.9e-190 668.3 522 68.4
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 2.4e-189 666.0 452 75.2
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.6e-188 663.3 526 66.7
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.1e-188 662.9 538 65.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 3.5e-188 662.1 538 66.0
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 3.0e-187 659.1 536 64.9
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-187 658.7 528 65.7
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.6e-187 657.9 532 64.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 6.6e-187 657.9 532 65.2
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.6e-187 657.5 532 67.3
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.1e-186 657.1 449 74.6
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.5e-186 656.0 524 65.3
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 3.3e-186 655.6 536 65.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 4.3e-186 655.2 535 64.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 7.3e-186 654.4 535 65.4
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 9.5e-186 654.1 535 65.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.6e-185 653.3 535 64.7
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 2.8e-185 652.5 532 65.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 4.7e-185 651.7 535 66.2
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 6.2e-185 651.4 536 64.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.8e-184 649.8 533 64.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 4.0e-184 648.7 535 65.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 5.2e-184 648.3 524 65.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.2e-184 648.3 531 65.5
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.2e-184 648.3 488 69.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 8.9e-184 647.5 531 65.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 7.5e-183 644.4 534 64.4
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 9.9e-183 644.0 451 72.3
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.3e-182 643.7 460 71.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.2e-182 642.9 447 73.4
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 2.2e-182 642.9 515 65.4
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.9e-182 641.7 525 65.7
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 4.9e-182 641.7 530 64.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 4.9e-182 641.7 534 64.6
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.3e-182 641.0 531 65.2
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 8.3e-182 641.0 531 65.2
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.1e-181 640.6 532 63.2
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.1e-181 640.6 443 73.6
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.4e-181 640.2 532 63.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.9e-181 639.8 538 65.2
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.4e-181 639.4 506 66.8
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 3.2e-181 639.0 532 63.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 9.2e-181 637.5 531 64.8
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.2e-180 637.1 533 64.0
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.6e-180 635.2 500 68.0
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.0e-180 634.8 445 71.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.3e-179 633.6 437 73.7
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 3.0e-179 632.5 439 72.7
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 3.0e-179 632.5 536 64.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 5.1e-179 631.7 468 68.8
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.5e-178 630.2 455 70.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.5e-178 630.2 519 64.2
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.5e-178 630.2 466 68.7
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.9e-178 629.8 491 67.6
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.9e-178 629.8 537 63.3
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.5e-178 629.4 523 64.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.2e-177 627.1 520 63.8
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.2e-177 627.1 450 70.2
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 2.1e-177 626.3 513 65.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.8e-177 625.9 473 67.4
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-177 625.5 479 67.2
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 6.2e-177 624.8 528 62.1
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 8.1e-177 624.4 486 67.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.4e-176 623.6 494 65.8
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.8e-176 623.2 527 63.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.8e-176 623.2 513 64.5
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 4.0e-176 622.1 515 63.1
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 5.2e-176 621.7 444 69.6
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-175 620.2 482 67.6
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.0e-175 619.8 486 66.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.0e-175 619.8 494 65.4
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.6e-175 619.4 444 69.8
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.6e-175 619.4 484 65.3
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.4e-175 619.0 482 67.4
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 3.4e-175 619.0 528 62.9
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 7.6e-175 617.8 435 71.0
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-174 617.1 486 66.0
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.7e-174 616.7 450 68.7
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 3.8e-174 615.5 484 66.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.9e-174 615.1 444 69.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 4.9e-174 615.1 445 69.4
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 4.9e-174 615.1 443 70.0
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.9e-174 615.1 450 68.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.9e-174 615.1 450 68.4
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 8.4e-174 614.4 439 70.4
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.4e-173 613.6 443 69.5
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-173 613.6 450 68.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 9.2e-173 610.9 439 70.2
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 9.2e-173 610.9 460 67.8
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.2e-172 610.5 525 61.9
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 7.8e-172 607.8 439 69.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 7.8e-172 607.8 462 67.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 8.7e-171 604.4 536 61.9
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.3e-170 602.4 461 66.2
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 3.3e-170 602.4 463 67.4
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 9.9e-167 590.9 449 66.1
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.4e-166 588.2 533 60.2
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 3.2e-165 585.9 488 62.7
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 7.8e-164 581.3 491 61.1
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.1e-161 573.2 483 63.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.1e-152 544.3 380 71.6
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.0e-151 540.0 414 64.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.1e-148 530.0 534 56.0
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.7e-145 519.2 480 57.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 7.9e-140 501.5 434 59.0
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 6.3e-137 491.9 486 56.6
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.6e-135 486.5 428 58.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.1e-128 464.5 529 51.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.4e-128 463.4 402 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.6e-127 459.9 424 54.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.2e-126 456.8 431 54.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.4e-122 441.8 332 67.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.3e-121 438.7 418 54.5
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.0e-119 433.7 266 78.2
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 2.0e-119 433.7 416 54.3
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-119 433.0 346 63.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 3.6e-116 422.9 333 64.9
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.3e-114 416.4 535 47.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-112 411.0 317 65.9
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.7e-110 404.1 256 77.0
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.4e-107 394.4 318 64.5
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 5.7e-106 389.0 307 65.8
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.2e-103 381.3 347 60.2
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 5.2e-99 365.9 339 60.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.3e-89 334.7 423 44.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.6e-87 327.8 201 77.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.7e-87 327.0 388 45.1
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.5e-87 326.6 268 65.7
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 4.4e-82 309.7 286 59.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-75 288.5 283 57.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.0e-67 260.0 268 53.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 4.4e-66 256.5 233 57.5
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 6.4e-65 252.7 235 58.7
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 9.2e-64 248.8 234 56.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 8.6e-62 242.3 124 88.7
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.4e-56 224.2 336 40.2
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.1e-51 207.2 348 37.6
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 8.4e-49 199.1 193 59.1
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 7.6e-42 176.0 191 51.3
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.1e-39 167.9 101 82.2
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.0e-38 165.6 137 62.8
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.8e-36 156.8 85 85.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.4e-35 155.2 99 82.8
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 8.4e-33 146.0 110 70.0
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-27 129.0 76 86.8
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.3e-22 111.3 117 54.7
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 6.7e-22 109.8 83 63.9
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.1e-21 109.0 90 58.9
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.5e-18 98.6 60 90.0
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.7e-17 95.1 60 85.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-16 91.7 71 67.6
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.5e-13 82.0 50 72.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.6e-10 71.2 44 72.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 8.8e-06 56.2 115 31.3


User provided reference genes

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