Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 0.0e+00 1416.4 706 100.0
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 1.7e-286 989.2 721 73.5
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.9e-221 773.1 677 62.9
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.5e-218 762.7 682 61.6
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 3.8e-174 615.9 643 52.1
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 2.5e-173 613.2 693 50.4
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 1.2e-167 594.3 646 49.8
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.4e-160 570.9 645 49.8
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 5.0e-158 562.4 674 48.2
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 6.3e-153 545.4 678 47.8
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 3.5e-151 539.7 680 46.8
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 1.3e-150 537.7 682 45.3
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 4.7e-148 529.3 669 45.9
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 4.7e-148 529.3 676 45.1
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.4e-144 516.9 472 59.5
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.5e-141 507.7 688 43.3
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 5.5e-141 505.8 670 43.7
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 9.4e-141 505.0 670 43.6
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.1e-140 503.8 668 44.0
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.0e-139 501.5 679 44.5
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.6e-138 496.9 671 43.5
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 3.4e-138 496.5 674 43.8
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 1.7e-137 494.2 651 45.8
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.7e-137 494.2 677 44.8
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 3.1e-136 490.0 672 43.8
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 4.5e-135 486.1 660 44.5
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 2.9e-134 483.4 689 43.4
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 2.1e-132 477.2 672 43.9
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 3.6e-132 476.5 695 42.4
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 1.8e-131 474.2 666 42.5
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 1.8e-131 474.2 644 43.6
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 5.2e-131 472.6 662 43.1
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 6.8e-131 472.2 665 43.0
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 3.4e-130 469.9 680 42.2
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 4.9e-129 466.1 669 42.2
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 7.0e-128 462.2 677 41.5
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 1.6e-127 461.1 650 41.8
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 2.7e-127 460.3 668 43.1
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 2.3e-126 457.2 678 41.7
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 6.6e-126 455.7 671 39.8
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 2.5e-125 453.8 681 41.1
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 9.5e-125 451.8 687 41.3
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.2e-124 451.4 653 43.2
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 3.6e-124 449.9 691 40.4
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 8.0e-124 448.7 670 42.1
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 8.9e-123 445.3 653 42.9
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 4.9e-121 439.5 683 40.8
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 2.4e-120 437.2 682 41.1
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 1.2e-119 434.9 656 41.2
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.6e-119 434.5 662 40.3
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 2.0e-119 434.1 652 40.5
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 3.5e-119 433.3 656 40.7
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 6.0e-119 432.6 678 40.1
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 6.0e-119 432.6 555 43.8
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 3.9e-118 429.9 677 39.7
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.1e-117 428.3 660 40.8
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 5.6e-117 426.0 700 40.0
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 7.3e-117 425.6 653 41.8
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 2.1e-116 424.1 649 39.4
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 5.2e-115 419.5 660 39.4
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 1.7e-113 414.5 668 40.7
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 2.4e-112 410.6 623 39.8
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 9.2e-112 408.7 645 39.4
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.0e-110 405.2 670 39.6
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.0e-110 405.2 678 39.4
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 6.6e-110 402.5 660 38.2
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 7.3e-109 399.1 683 38.2
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.6e-108 397.9 666 38.3
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.3e-107 394.0 675 37.5
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 1.4e-104 384.8 691 37.2
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.9e-101 374.4 562 40.9
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.0e-98 364.4 624 38.1
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 4.2e-96 356.7 645 36.3
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 2.7e-95 354.0 752 34.3
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.5e-93 348.2 574 39.0
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 2.4e-91 340.9 572 38.1
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.1e-88 332.0 626 35.9
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.4e-88 331.6 694 35.4
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 5.4e-88 329.7 625 35.5
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.1e-87 327.8 524 39.7
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 2.3e-86 324.3 447 41.8
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 2.3e-86 324.3 678 34.5
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 6.9e-83 312.8 559 37.9
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 4.6e-79 300.1 669 33.5
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 1.3e-68 265.4 321 47.4
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 2.1e-68 264.6 664 30.9
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.4e-67 261.9 672 31.5
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 5.3e-67 260.0 389 42.9
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 9.0e-67 259.2 652 31.4
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.5e-66 258.5 671 30.8
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 4.5e-66 256.9 686 30.5
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 7.6e-66 256.1 651 31.5
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.3e-65 255.4 687 31.1
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.7e-65 255.0 441 37.2
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 2.2e-65 254.6 687 31.4
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 1.2e-63 248.8 683 30.0
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.2e-63 248.8 683 30.0
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 4.6e-63 246.9 680 31.0
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 6.1e-63 246.5 647 29.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 7.9e-63 246.1 643 30.2
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 2.3e-62 244.6 202 61.9
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 3.9e-62 243.8 534 33.0
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.1e-61 242.3 657 31.8
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 3.3e-61 240.7 610 31.1
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.6e-60 238.4 498 33.9
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 5.3e-59 233.4 615 30.9
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.0e-57 229.2 298 42.6
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 1.0e-54 219.2 182 59.3
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 3.3e-53 214.2 662 26.9
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 1.8e-51 208.4 341 39.9
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 3.1e-51 207.6 428 33.4
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 3.1e-51 207.6 622 27.3
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 1.0e-49 202.6 179 54.7
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.2e-49 201.4 323 37.5
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 5.2e-46 190.3 457 30.9
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 6.7e-46 189.9 548 28.5
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.3e-44 185.7 211 50.2
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.3e-41 175.6 311 37.3
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 3.8e-41 174.1 211 42.2
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 2.6e-37 161.4 202 47.0
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 4.8e-36 157.1 324 34.0
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 4.8e-36 157.1 164 50.0
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 1.1e-35 156.0 144 56.2
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 1.2e-34 152.5 147 54.4
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 2.0e-34 151.8 548 26.3
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 2.0e-34 151.8 187 45.5
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 4.5e-34 150.6 496 28.4
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 1.3e-33 149.1 182 45.6
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.7e-31 141.4 630 23.8
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 5.2e-30 137.1 124 54.8
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 7.7e-26 123.2 670 23.6
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 3.0e-22 111.3 400 25.8
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-21 109.4 138 39.9
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 1.1e-16 92.8 216 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.5e-16 91.7 496 23.4
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.2e-11 74.7 65 52.3
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 3.2e-11 74.7 115 37.4
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 2.0e-10 72.0 149 34.9
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 5.0e-09 67.4 57 61.4
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.5e-08 65.9 132 32.6
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 7.3e-08 63.5 103 43.7
HPP92_010834 Vanilla planifolia HOM05D004843 ORTHO05D005833 7.3e-08 63.5 135 37.0
Oeu018912.1 Olea europaea HOM05D004843 ORTHO05D005833 4.7e-07 60.8 36 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.0e-06 59.7 159 25.2
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 3.1e-06 58.2 108 41.7


User provided reference genes

Program Settings