Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 3.2e-262 907.9 461 100.0
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.1e-226 788.9 436 91.5
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.5e-219 765.4 448 86.4
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 4.1e-209 731.5 419 87.8
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 4.5e-200 701.4 433 81.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.5e-198 695.7 418 83.3
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.5e-198 695.7 441 78.7
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.2e-197 693.3 432 80.1
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.6e-197 693.0 422 82.0
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.5e-195 686.4 419 80.7
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.5e-195 686.4 413 83.1
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.0e-195 686.0 416 82.2
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 4.3e-195 684.9 419 80.9
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 5.7e-195 684.5 421 80.0
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.3e-194 683.3 429 80.2
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.3e-194 683.3 419 80.7
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 3.7e-194 681.8 415 83.9
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.4e-193 679.9 432 78.7
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.8e-193 679.5 429 78.8
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 6.9e-193 677.6 419 80.4
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.5e-192 676.4 432 78.7
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 4.5e-192 674.9 421 77.7
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 7.7e-192 674.1 420 79.3
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 7.7e-192 674.1 418 80.4
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 7.7e-192 674.1 421 78.1
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.9e-191 672.2 409 82.6
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 5.0e-191 671.4 431 78.2
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.1e-190 670.2 406 82.0
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.2e-190 668.7 415 80.5
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.2e-190 668.7 415 80.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 7.2e-190 667.5 414 80.7
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 1.2e-189 666.8 417 81.3
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 1.6e-189 666.4 418 79.2
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 2.7e-189 665.6 415 80.2
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 7.9e-189 664.1 415 80.5
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 5.1e-188 661.4 422 76.8
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 5.1e-188 661.4 433 76.2
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 2.0e-187 659.4 436 77.1
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.6e-187 659.1 421 79.6
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 2.8e-186 655.6 417 77.2
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.8e-185 652.9 430 75.6
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.6e-184 649.0 415 77.1
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 2.6e-184 649.0 443 73.8
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 5.9e-184 647.9 424 77.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 5.9e-184 647.9 430 74.9
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 7.7e-184 647.5 452 72.6
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.0e-183 647.1 405 80.0
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.2e-183 646.0 417 77.0
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 8.5e-183 644.0 417 77.0
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 8.5e-183 644.0 417 77.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.1e-182 643.7 416 78.1
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 3.2e-182 642.1 414 75.1
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.6e-181 639.8 415 75.9
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.1e-181 639.4 407 77.6
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 6.1e-181 637.9 419 74.5
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 5.2e-180 634.8 420 75.7
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.1e-179 633.6 454 69.6
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 7.5e-179 630.9 474 69.2
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.2e-178 629.4 431 74.7
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.8e-177 626.3 435 74.3
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 7.0e-177 624.4 414 75.1
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.0e-175 620.5 431 71.2
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.3e-175 620.2 423 73.8
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 1.3e-175 620.2 414 73.9
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 3.8e-175 618.6 419 75.7
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.8e-175 618.6 414 76.6
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 5.0e-175 618.2 425 72.9
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 2.7e-173 612.5 417 72.7
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 6.1e-173 611.3 417 73.6
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.0e-172 610.5 417 72.7
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.3e-172 609.4 414 73.9
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 8.8e-172 607.4 424 72.6
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 2.0e-171 606.3 422 73.0
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.0e-171 606.3 423 71.6
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 2.6e-171 605.9 424 72.4
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 1.3e-170 603.6 423 72.3
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 3.7e-170 602.1 414 72.7
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.4e-169 600.1 423 71.9
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.4e-169 599.4 413 71.9
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.4e-169 599.4 401 73.1
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.3e-167 593.6 456 66.4
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 2.9e-167 592.4 424 71.2
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 3.6e-165 585.5 427 67.9
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 4.3e-158 562.0 444 65.3
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.6e-155 552.7 414 68.8
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 2.4e-153 546.2 422 67.3
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 8.3e-146 521.2 501 57.7
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 9.5e-142 507.7 327 78.6
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 2.1e-141 506.5 310 81.3
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 8.4e-130 468.0 310 74.5
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 8.6e-127 458.0 329 69.3
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 4.3e-126 455.7 461 54.2
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 5.8e-123 445.3 446 53.6
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 5.8e-123 445.3 446 53.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 5.6e-118 428.7 254 82.3
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 3.1e-116 422.9 239 87.9
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 9.3e-113 411.4 282 72.7
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.8e-109 399.8 254 76.8
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.5e-97 360.1 404 48.8
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.2e-97 359.4 197 89.3
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 3.9e-95 352.8 229 74.7
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.6e-91 340.1 433 47.8
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 3.7e-77 293.1 163 90.2
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 6.9e-76 288.9 515 36.5
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.1e-73 281.6 159 84.9
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.9e-73 280.8 393 40.2
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.7e-72 276.2 160 83.1
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 7.0e-44 182.6 154 64.3
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 2.3e-42 177.6 103 86.4
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.4e-38 163.3 248 36.7
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.2e-31 139.8 348 31.3
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.3e-26 125.2 68 85.3
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 6.8e-15 86.3 54 72.2
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 8.1e-08 62.8 257 25.7
Lj6C597G13 Lonicera japonica HOM05D002203 ORTHO05D002647 1.4e-07 62.0 279 25.8
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 1.4e-07 62.0 148 32.4
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 3.1e-07 60.8 162 29.0
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 3.1e-07 60.8 162 29.0
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 3.1e-07 60.8 267 23.6
Cre03.g144284 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D000536 6.9e-07 59.7 172 26.7
arahy.Tifrunner.gnm1.ann1.C0GFHN Arachis hypogaea HOM05D002203 ORTHO05D002647 9.0e-07 59.3 275 24.4
Lsat_1_v5_gn_9_3640 Lactuca sativa HOM05D002203 ORTHO05D002647 1.2e-06 58.9 304 22.0
Prupe.8G240700 Prunus persica HOM05D002203 ORTHO05D002647 1.2e-06 58.9 220 24.5
Rhsim13G0025200 Rhododendron simsii HOM05D002203 ORTHO05D002647 1.2e-06 58.9 247 23.9
COL.COLO4_09091 Corchorus olitorius HOM05D002203 ORTHO05D002647 1.5e-06 58.5 218 22.5
Hund18000 Selenicereus undatus HOM05D002203 ORTHO05D002647 1.5e-06 58.5 272 24.3
Cpa.g.sc370.9 Carica papaya HOM05D002203 ORTHO05D002647 2.0e-06 58.2 217 24.0
Ciclev10019087m.g Citrus clementina HOM05D002203 ORTHO05D002647 2.0e-06 58.2 220 25.0
Pp3c7_11520 Physcomitrium patens HOM05D002203 ORTHO05D002647 2.0e-06 58.2 90 32.2
ATR0626G299 Amborella trichopoda HOM05D002203 ORTHO05D002647 2.6e-06 57.8 182 26.9
Lsat_1_v5_gn_5_188180 Lactuca sativa HOM05D002203 ORTHO05D002647 2.6e-06 57.8 171 25.7
Actinidia00755 Actinidia chinensis HOM05D002203 ORTHO05D002647 3.4e-06 57.4 251 23.1
Cfa015615 Carpinus fangiana HOM05D002203 ORTHO05D002647 3.4e-06 57.4 90 32.2
ClCG05G005280 Citrullus lanatus HOM05D002203 ORTHO05D002647 3.4e-06 57.4 284 22.9
Haze_00928 Corylus avellana HOM05D002203 ORTHO05D002647 3.4e-06 57.4 90 32.2
Hma1.2p1_0257F.1_g103380 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 3.4e-06 57.4 292 25.0
THA.LOC104804970 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 3.4e-06 57.4 237 24.9
BcaC04g18629 Brassica carinata HOM05D000563 ORTHO05D000536 4.4e-06 57.0 94 37.2
Ca_24382_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 4.4e-06 57.0 162 26.5
Dinv34756 Davidia involucrata HOM05D002203 ORTHO05D002647 4.4e-06 57.0 218 23.9
PSO302G0024 Papaver somniferum HOM05D002203 ORTHO05D002647 4.4e-06 57.0 292 22.9
Psat3g064160 Pisum sativum HOM05D002203 ORTHO05D002647 4.4e-06 57.0 162 28.4
Psat6g208840 Pisum sativum HOM05D002203 ORTHO05D002647 4.4e-06 57.0 163 28.2
Sabra05G0160000 Salix brachista HOM05D002203 ORTHO05D002647 4.4e-06 57.0 218 25.7
Sopen09g026940 Solanum pennellii HOM05D002203 ORTHO05D002647 4.4e-06 57.0 251 24.7
PGSC0003DMG400012880 Solanum tuberosum HOM05D002203 ORTHO05D002647 4.4e-06 57.0 251 24.7
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 4.4e-06 57.0 92 33.7
BcaB08g36629 Brassica carinata HOM05D000563 ORTHO05D000536 5.8e-06 56.6 92 38.0
AUR62040485 Chenopodium quinoa HOM05D002203 ORTHO05D002647 5.8e-06 56.6 251 22.7
CsaV3_3G013510 Cucumis sativus L. HOM05D002203 ORTHO05D002647 5.8e-06 56.6 266 22.9
Aa31LG11G10340 Aethionema arabicum HOM05D002203 ORTHO05D002647 7.6e-06 56.2 195 26.2
CSS0019077 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 7.6e-06 56.2 181 26.0
CSS0049394 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 7.6e-06 56.2 293 24.6
CAN.G232.4 Capsicum annuum HOM05D002203 ORTHO05D002647 7.6e-06 56.2 251 24.3
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 7.6e-06 56.2 149 28.9
Migut.D00299 Erythranthe guttata HOM05D002203 ORTHO05D002647 7.6e-06 56.2 170 27.6
HanXRQChr01g0003111 Helianthus annuus HOM05D002203 ORTHO05D002647 7.6e-06 56.2 227 23.8
PSO170G5776 Papaver somniferum HOM05D002203 ORTHO05D002647 7.6e-06 56.2 204 24.0
PSO832G0159 Papaver somniferum HOM05D002203 ORTHO05D002647 7.6e-06 56.2 150 27.3
RcHm_v2.0_Chr6g0291001 Rosa chinensis HOM05D002203 ORTHO05D002647 7.6e-06 56.2 167 26.3
Sed0017737 Sechium edule HOM05D002203 ORTHO05D002647 7.6e-06 56.2 266 22.2
Sed0023903 Sechium edule HOM05D002203 ORTHO05D002647 7.6e-06 56.2 266 22.6
AT5G19000 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 9.9e-06 55.8 92 37.0
EL10As3g23353 Beta vulgaris HOM05D002203 ORTHO05D002647 9.9e-06 55.8 177 26.6
MELO3C006547.2 Cucumis melo HOM05D002203 ORTHO05D002647 9.9e-06 55.8 298 23.8
HanXRQChr11g0336141 Helianthus annuus HOM05D002203 ORTHO05D002647 9.9e-06 55.8 264 22.3
MD11G1284800 Malus domestica HOM05D002203 ORTHO05D002647 9.9e-06 55.8 162 28.4
Medtr1g104870 Medicago truncatula HOM05D002203 ORTHO05D002647 9.9e-06 55.8 167 26.9
Rhsim04G0204900 Rhododendron simsii HOM05D002203 ORTHO05D002647 9.9e-06 55.8 293 23.5
SGA_v2.0_scaffold138G35338 Striga asiatica HOM05D002203 ORTHO05D002647 9.9e-06 55.8 231 25.1


User provided reference genes

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