Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.0e-144 515.8 262 100.0
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.4e-134 482.3 256 96.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.2e-125 453.4 257 92.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.4e-120 435.3 256 89.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.4e-119 431.0 256 89.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.4e-118 429.1 256 88.7
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.0e-116 423.7 262 85.5
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.8e-116 422.9 261 85.8
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.3e-115 418.7 262 85.1
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.6e-114 416.4 262 84.4
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.1e-113 413.7 262 84.4
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 9.0e-113 410.6 257 84.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.0e-112 409.5 260 83.5
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 7.6e-112 407.5 262 82.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 9.9e-112 407.1 259 83.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.7e-111 406.4 256 84.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 4.9e-111 404.8 261 80.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.5e-110 401.4 261 82.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.3e-110 400.6 262 81.7
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.1e-109 399.4 262 81.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.7e-109 399.1 260 82.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.7e-109 399.1 261 82.0
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.0e-108 397.1 262 80.9
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.9e-108 395.2 262 80.5
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.1e-108 394.8 262 79.4
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.9e-107 392.9 261 80.1
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.9e-107 392.9 256 83.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.5e-107 392.5 262 79.4
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.3e-107 391.7 272 77.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 5.6e-107 391.3 256 82.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.6e-106 389.8 260 80.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.2e-106 387.9 259 79.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.1e-105 387.1 262 80.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.4e-105 386.7 255 80.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.4e-105 386.7 262 79.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.1e-105 385.6 257 80.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.2e-104 383.6 263 77.2
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.6e-104 382.5 257 79.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.6e-104 382.5 257 79.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.6e-104 380.9 262 79.4
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.7e-103 379.8 259 79.9
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.7e-103 379.8 253 80.6
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.8e-103 378.6 253 80.2
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.8e-103 378.6 259 76.4
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 6.5e-103 377.9 260 79.2
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 8.4e-103 377.5 257 78.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.4e-102 376.7 251 77.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.4e-102 376.7 262 77.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.9e-102 376.3 253 79.8
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.2e-102 375.6 253 79.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 9.3e-102 374.0 257 78.2
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.7e-101 372.5 262 77.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.5e-101 372.1 252 78.2
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.5e-101 372.1 254 79.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 7.9e-101 370.9 254 75.2
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.0e-100 370.5 255 78.0
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.0e-100 369.0 255 77.6
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.9e-100 368.6 253 77.1
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-100 368.6 253 77.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-100 368.6 253 77.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.9e-100 368.6 254 79.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 5.1e-100 368.2 253 77.5
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.3e-99 365.5 253 76.3
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.3e-99 365.5 239 80.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.3e-99 365.5 257 76.7
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 3.7e-98 362.1 255 76.9
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 3.7e-98 362.1 262 76.3
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 8.2e-98 360.9 252 77.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 8.2e-98 360.9 258 77.9
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 5.3e-97 358.2 259 76.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 6.9e-97 357.8 260 75.8
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.9e-97 357.8 260 75.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.9e-97 357.8 215 87.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-96 357.1 259 75.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-96 356.3 255 74.9
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.6e-96 355.9 259 75.7
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 5.9e-96 354.8 235 80.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 5.9e-96 354.8 235 80.4
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-95 353.6 235 80.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.3e-95 353.6 218 84.9
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.7e-95 353.2 258 74.4
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-95 353.2 255 74.9
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.0e-95 351.7 255 74.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 5.0e-95 351.7 260 73.8
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 8.5e-95 350.9 255 74.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.2e-94 349.0 258 73.6
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.5e-94 348.2 231 77.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.2e-94 347.8 231 77.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 7.9e-93 344.4 255 73.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.4e-92 343.6 257 72.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.3e-92 342.8 257 73.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.3e-92 342.8 264 73.1
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.1e-92 341.7 258 73.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.1e-92 341.7 231 81.0
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.5e-91 340.1 259 73.0
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.5e-91 339.3 253 73.9
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.3e-91 338.6 260 73.8
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 7.4e-91 337.8 258 73.6
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.7e-90 336.7 261 72.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 8.2e-90 334.3 257 72.4
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-89 334.0 257 70.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.4e-89 332.8 213 83.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-87 327.4 202 84.2
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-87 326.6 202 84.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-87 326.6 202 84.2
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.9e-87 325.9 260 70.8
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.4e-86 323.6 228 77.2
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.1e-85 319.7 228 75.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 6.1e-85 318.2 204 83.8
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-84 316.6 197 84.8
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.1e-84 315.1 201 83.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.7e-84 314.7 249 68.7
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.1e-83 313.9 203 82.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.0e-83 313.2 254 68.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.7e-82 310.1 259 68.7
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.8e-82 308.5 257 66.5
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 6.3e-82 308.1 239 69.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 8.2e-82 307.8 190 86.3
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-80 303.9 174 89.7
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.5e-79 297.7 247 65.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.4e-78 297.0 187 84.5
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 7.2e-78 294.7 258 65.9
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 4.4e-75 285.4 207 73.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-73 280.4 257 63.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.8e-71 272.3 207 69.6
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-70 270.8 257 62.3
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.1e-69 266.5 205 70.2
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 4.7e-69 265.4 185 78.4
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.3e-66 254.6 233 61.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.3e-65 251.9 194 67.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 8.5e-63 244.6 267 51.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 5.5e-62 241.9 195 64.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 9.4e-62 241.1 262 52.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.4e-62 241.1 138 89.1
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.6e-61 240.4 255 53.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.1e-61 238.4 205 64.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.0e-59 233.4 138 84.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.6e-56 223.8 165 70.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.2e-54 214.9 131 79.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.8e-51 204.5 158 69.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.9e-50 202.2 139 70.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.4e-49 199.9 146 72.6
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 4.1e-49 199.1 169 66.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-43 179.5 205 57.6
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-41 173.7 124 75.0
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 5.4e-41 172.2 226 42.9
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 5.4e-41 172.2 100 91.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.0e-41 171.8 112 77.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.6e-29 132.9 95 73.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.2e-29 132.1 82 80.5
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.4e-27 125.9 76 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 9.9e-27 124.8 64 92.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.6e-16 89.4 93 54.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.6e-15 85.5 116 49.1
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-13 81.3 110 47.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.0e-11 73.9 51 76.5
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 9.9e-11 71.6 51 76.5
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-09 66.6 45 77.8
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 8.7e-07 58.5 64 54.7


User provided reference genes

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