Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.4e-56 222.6 109 100.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.3e-52 209.5 109 94.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.7e-52 209.1 106 94.3
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.8e-52 208.4 109 93.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.8e-52 207.6 103 95.1
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.8e-52 207.6 103 96.1
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.4e-51 205.3 108 90.7
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.1e-51 204.5 106 91.5
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 6.9e-51 203.8 106 91.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 9.1e-51 203.4 106 91.5
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 2.6e-50 201.8 106 90.6
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 4.5e-50 201.1 105 87.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-49 198.7 106 91.5
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.2e-49 198.7 106 91.5
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.8e-49 198.0 108 88.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.5e-49 197.2 106 89.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 8.5e-49 196.8 108 87.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.9e-48 195.7 108 88.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 87.9
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 4.2e-48 194.5 106 87.7
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.2e-48 193.7 109 84.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 9.4e-48 193.4 105 89.5
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 9.4e-48 193.4 103 90.3
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.2e-47 193.0 104 89.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.2e-47 193.0 104 89.4
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.2e-47 193.0 106 86.8
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.2e-47 193.0 108 84.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.2e-47 193.0 106 88.7
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.6e-47 192.6 104 88.5
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-47 192.2 106 87.7
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.1e-47 192.2 106 86.8
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 3.6e-47 191.4 106 88.7
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 4.7e-47 191.0 106 84.9
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.1e-47 190.7 106 86.8
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 86.8
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 86.8
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 86.8
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 86.8
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 86.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.0e-46 189.9 106 84.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-46 189.5 104 87.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-46 189.5 104 87.5
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 82.6
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.8e-46 189.1 104 87.5
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 83.5
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.8e-46 189.1 106 84.9
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.3e-46 188.7 106 85.8
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.0e-46 188.3 106 84.9
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.0e-46 188.3 106 84.9
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-46 188.3 109 82.6
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.9e-46 188.0 104 86.5
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.9e-46 188.0 104 86.5
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 5.2e-46 187.6 109 81.7
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 5.2e-46 187.6 106 84.9
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 8.8e-46 186.8 109 81.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.1e-45 186.4 108 82.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-45 186.4 109 82.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 85.4
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.5e-45 186.0 104 89.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.5e-45 186.0 110 83.6
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.5e-45 186.0 104 86.5
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.5e-45 186.0 106 84.0
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 84.0
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.4e-45 184.5 104 84.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.7e-45 184.1 106 84.0
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 5.7e-45 184.1 109 80.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.7e-45 184.1 109 80.7
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 7.4e-45 183.7 103 85.4
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 7.4e-45 183.7 99 87.9
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 7.4e-45 183.7 106 84.9
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 9.7e-45 183.3 102 85.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 9.7e-45 183.3 106 81.1
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.7e-44 182.6 109 79.8
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.8e-44 181.8 109 79.8
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 4.8e-44 181.0 106 80.2
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 6.3e-44 180.6 109 78.9
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 8.2e-44 180.3 103 83.5
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.1e-43 179.9 102 85.3
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.1e-43 179.9 105 81.9
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-43 179.9 104 80.8
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.4e-43 179.5 108 77.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.1e-43 178.3 106 79.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.1e-43 178.3 106 79.2
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 5.3e-43 177.6 104 79.8
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 9.1e-43 176.8 103 81.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.6e-42 176.0 106 78.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 109 79.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 109 79.8
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 81.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 2.0e-42 175.6 108 77.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 2.0e-42 175.6 98 85.7
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 78.3
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 3.5e-42 174.9 98 85.7
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 107 79.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.9e-42 174.1 107 79.4
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.0e-41 173.3 106 78.3
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 85.7
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 2.2e-41 172.2 109 76.1
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 78.3
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 80.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.0e-41 171.0 98 80.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.9e-40 169.1 106 74.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.5e-40 168.7 106 77.4
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.2e-40 168.3 95 87.4
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.2e-40 167.9 98 81.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.2e-39 166.4 111 73.9
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.6e-39 166.0 105 77.1
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.7e-39 165.2 109 79.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 6.1e-39 164.1 107 77.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 161.8 98 78.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 4.0e-38 161.4 106 72.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.7e-38 160.6 106 72.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.7e-36 154.8 98 74.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 6.3e-36 154.1 106 67.9
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-35 152.9 110 66.4
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.4e-35 152.9 110 66.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.8e-35 152.5 110 66.4
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.8e-35 152.5 106 67.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-35 151.4 110 65.5
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 4.1e-35 151.4 110 65.5
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.3e-35 151.0 106 67.9
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 5.3e-35 151.0 110 67.3
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.2e-34 149.8 106 66.0
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.6e-34 149.4 106 66.0
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 4.5e-34 147.9 106 66.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 65.1
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 66.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 111 64.9
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 111 64.9
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 111 64.9
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 2.2e-33 145.6 108 65.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.9e-32 142.5 106 65.1
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.5e-32 142.1 99 68.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.2e-32 141.7 87 80.5
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 4.2e-32 141.4 99 66.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.5e-32 141.0 94 78.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 8.0e-31 137.1 103 64.1
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 2.3e-30 135.6 104 67.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 5.7e-29 131.0 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.8e-27 125.9 98 61.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.0e-27 124.0 92 67.4
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-26 122.5 81 70.4
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.0e-25 120.2 65 87.7
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 6.5e-25 117.5 75 80.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.3e-24 115.2 94 61.7
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 3.3e-24 115.2 83 66.3
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 5.5e-24 114.4 93 60.2
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 7.2e-24 114.0 83 66.3
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.8e-22 109.4 97 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 5.2e-22 107.8 88 60.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 6.3e-20 100.9 56 82.1
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 5.4e-19 97.8 87 55.2
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 7.0e-19 97.4 58 79.3
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.5e-18 95.1 56 82.1
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.5e-18 95.1 79 63.3
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 4.5e-18 94.7 57 80.7
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.3e-17 92.4 56 80.4
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.2e-15 86.7 106 47.2
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.7e-12 76.3 46 82.6
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.1e-11 73.6 86 46.5
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 2.1e-07 59.3 83 42.2


User provided reference genes

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