Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 7.9e-88 327.0 158 100.0
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 4.3e-78 294.7 155 90.3
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 2.2e-69 265.8 158 78.5
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 1.4e-68 263.1 158 77.2
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 2.4e-68 262.3 158 77.2
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 9.1e-68 260.4 159 78.6
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.3e-66 256.5 155 75.5
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 9.4e-65 250.4 155 72.9
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 4.7e-64 248.1 158 72.8
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 6.1e-64 247.7 158 74.1
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 7.9e-64 247.3 158 72.8
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 1.0e-63 246.9 156 73.7
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.8e-63 246.1 151 73.5
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 3.9e-63 245.0 157 72.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 5.1e-63 244.6 155 72.3
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 6.7e-63 244.2 155 72.3
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 8.8e-63 243.8 157 74.5
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 8.8e-63 243.8 150 74.7
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 2.6e-62 242.3 158 70.9
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.7e-62 241.1 158 72.8
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 5.7e-62 241.1 154 72.7
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 7.4e-62 240.7 150 73.3
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 1.3e-61 240.0 153 72.5
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.2e-61 239.2 150 74.7
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 2.8e-61 238.8 172 66.3
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 2.4e-60 235.7 154 72.1
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 1.2e-59 233.4 154 70.8
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.2e-59 233.4 154 71.4
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.5e-59 231.9 153 71.2
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 3.5e-59 231.9 150 72.0
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.0e-58 230.3 150 71.3
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 1.0e-58 230.3 150 71.3
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 1.0e-58 230.3 150 71.3
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.3e-58 229.9 155 71.0
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.7e-58 229.6 155 70.3
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 2.2e-58 229.2 155 68.4
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.9e-58 228.8 155 66.5
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 6.5e-58 227.6 155 69.7
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 6.5e-58 227.6 156 64.7
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 2.5e-57 225.7 150 72.0
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 2.5e-57 225.7 155 68.4
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.5e-57 225.7 152 70.4
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 5.5e-57 224.6 154 66.2
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 7.2e-57 224.2 158 69.6
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 9.4e-57 223.8 156 69.9
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 1.2e-56 223.4 148 70.3
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.2e-56 223.4 154 66.2
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 1.6e-56 223.0 154 66.9
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.7e-56 222.2 154 69.5
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.7e-56 222.2 154 69.5
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.7e-56 222.2 151 66.9
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 3.6e-56 221.9 155 66.5
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 3.6e-56 221.9 151 68.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 4.7e-56 221.5 158 67.1
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 6.1e-56 221.1 151 67.5
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 1.0e-55 220.3 151 66.9
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.4e-55 219.9 155 66.5
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.4e-55 219.9 154 69.5
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.4e-55 219.9 158 67.7
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.8e-55 219.5 157 63.7
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 2.3e-55 219.2 155 64.5
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 3.0e-55 218.8 150 68.0
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 3.0e-55 218.8 154 66.2
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 4.0e-55 218.4 158 67.1
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 6.7e-55 217.6 150 68.7
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 8.8e-55 217.2 158 67.1
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.5e-54 216.5 156 65.4
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.5e-54 216.5 158 67.1
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 2.0e-54 216.1 153 62.1
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 2.6e-54 215.7 150 66.7
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 2.6e-54 215.7 151 66.2
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 3.3e-54 215.3 154 65.6
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 5.7e-54 214.5 154 70.1
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 7.5e-54 214.2 155 63.2
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 9.7e-54 213.8 156 64.7
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 9.7e-54 213.8 134 71.6
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 2.8e-53 212.2 154 65.6
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 6.3e-53 211.1 153 66.7
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.1e-52 210.3 155 63.2
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.8e-52 209.5 155 63.9
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.8e-52 209.5 155 63.9
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 1.8e-52 209.5 150 62.7
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 4.5e-51 204.9 152 64.5
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 4.5e-51 204.9 152 63.8
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 5.9e-51 204.5 158 62.0
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 7.7e-51 204.1 155 63.9
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 7.7e-51 204.1 165 58.2
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 7.7e-51 204.1 149 64.4
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.5e-49 199.9 182 56.6
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 2.7e-48 195.7 153 62.1
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 2.7e-48 195.7 157 59.9
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 3.6e-48 195.3 153 58.8
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.6e-46 189.1 141 63.1
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 4.4e-46 188.3 151 58.3
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 7.5e-46 187.6 151 58.9
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.8e-44 183.0 136 63.2
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 4.2e-41 171.8 99 78.8
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 9.5e-41 170.6 154 52.6
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 4.7e-40 168.3 164 51.2
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 1.4e-36 156.8 152 53.9
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 6.6e-34 147.9 90 77.8
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.1e-33 147.1 90 74.4
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.6e-32 143.3 104 65.4
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 6.1e-32 141.4 102 65.7
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 8.0e-32 141.0 146 51.4
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 1.4e-28 130.2 81 75.3
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 1.4e-28 130.2 81 75.3
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.2e-27 127.1 78 71.8
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 3.0e-26 122.5 81 72.8
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 6.2e-24 114.8 76 68.4
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 2.3e-23 112.8 86 62.8
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 8.9e-23 110.9 78 67.9
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.2e-16 90.5 97 47.4
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 2.8e-16 89.4 65 61.5
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 6.8e-15 84.7 70 52.9
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.7e-13 80.1 55 60.0
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 1.3e-10 70.5 78 52.6
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 4.7e-08 62.0 124 33.1
HanXRQChr13g0402451 Helianthus annuus HOM05D004398 ORTHO05D005268 2.3e-07 59.7 105 34.3
Ciclev10009736m.g Citrus clementina HOM05D004398 ORTHO05D005268 6.8e-07 58.2 90 34.4
Os01g0610400 Oryza sativa ssp. japonica HOM05D004398 ORTHO05D005268 6.8e-07 58.2 89 37.1
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 6.8e-07 58.2 81 35.8
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 1.2e-06 57.4 90 33.3
Sed0003647 Sechium edule HOM05D004398 ORTHO05D005268 1.5e-06 57.0 90 35.6
Nn8g39345 Nelumbo nucifera HOM05D004398 ORTHO05D005268 2.0e-06 56.6 88 33.0
Cpa.g.sc91.31 Carica papaya HOM05D004398 ORTHO05D005268 2.6e-06 56.2 90 34.4
Cc11_g01650 Coffea canephora HOM05D004398 ORTHO05D005268 2.6e-06 56.2 69 39.1
TWI63G1039 Tripterygium wilfordii HOM05D004398 ORTHO05D005268 2.6e-06 56.2 90 36.7
Potri.018G032400 Populus trichocarpa HOM05D004398 ORTHO05D005268 3.4e-06 55.8 66 40.9
Hund25700 Selenicereus undatus HOM05D004398 ORTHO05D005268 3.4e-06 55.8 80 37.5
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 4.4e-06 55.5 90 35.6
Potri.006G248900 Populus trichocarpa HOM05D004398 ORTHO05D005268 4.4e-06 55.5 90 35.6
CSS0033658 Camellia sinensis var. sinensis HOM05D004398 ORTHO05D005268 5.8e-06 55.1 90 34.4
CAN.G211.13 Capsicum annuum HOM05D004398 ORTHO05D005268 5.8e-06 55.1 70 35.7
ClCG08G013040 Citrullus lanatus HOM05D004398 ORTHO05D005268 5.8e-06 55.1 90 34.4
MELO3C011228.2 Cucumis melo HOM05D004398 ORTHO05D005268 5.8e-06 55.1 90 34.4
Actinidia13266 Actinidia chinensis HOM05D004398 ORTHO05D005268 7.6e-06 54.7 90 35.6
Nn2g11907 Nelumbo nucifera HOM05D004398 ORTHO05D005268 7.6e-06 54.7 89 32.6
Rhsim07G0150800 Rhododendron simsii HOM05D004398 ORTHO05D005268 7.6e-06 54.7 90 35.6
GSVIVG01035773001 Vitis vinifera HOM05D004398 ORTHO05D005268 7.6e-06 54.7 90 33.3
CDE02G1057 Ceratophyllum demersum HOM05D004398 ORTHO05D005268 9.9e-06 54.3 65 41.5
Peaxi162Scf01343g00154 Petunia axillaris HOM05D004398 ORTHO05D005268 9.9e-06 54.3 90 35.6


User provided reference genes

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