Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09223 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.4e-187 659.4 330 100.0
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 6.2e-119 431.4 361 65.4
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 6.5e-60 235.3 423 40.4
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.2e-59 231.9 437 38.9
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.7e-52 210.7 431 37.1
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 9.8e-48 194.9 420 36.9
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 1.8e-38 164.1 434 33.4
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 5.9e-37 159.1 329 38.6
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 9.8e-32 141.7 436 30.5
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.3e-31 141.4 447 29.3
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 1.1e-30 138.3 384 32.3
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 3.5e-29 133.3 404 31.4
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.6e-29 132.9 439 29.8
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 5.0e-28 129.4 436 30.0
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.1e-27 128.3 443 29.6
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.5e-27 127.9 414 30.4
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 5.6e-27 125.9 425 31.1
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 7.3e-27 125.6 444 29.3
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.8e-25 120.9 401 28.7
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 1.2e-24 118.2 407 28.0
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.5e-24 117.9 298 32.6
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 3.4e-24 116.7 420 28.3
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 4.4e-24 116.3 389 29.8
CSS0018366 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.7e-23 114.4 234 37.2
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 2.2e-23 114.0 121 50.4
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 1.4e-22 111.3 399 27.6
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 2.4e-22 110.5 455 26.4
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 3.2e-22 110.2 313 31.3
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.6e-21 107.8 399 29.3
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.6e-21 107.8 411 28.7
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 1.6e-21 107.8 427 27.6
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 3.5e-21 106.7 443 26.2
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 4.6e-21 106.3 285 32.3
Glyma.12G122400 Glycine max HOM05D004563 ORTHO05D002944 7.8e-21 105.5 392 28.3
VMungo1127G1865 Vigna mungo HOM05D004563 ORTHO05D002944 7.8e-21 105.5 376 29.0
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.0e-20 105.1 411 28.0
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.0e-20 105.1 389 28.3
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.0e-20 105.1 374 25.7
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.7e-20 104.4 402 29.9
Phvul.011G134500 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 2.3e-20 104.0 377 28.6
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 3.0e-20 103.6 436 26.8
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.9e-20 103.2 416 26.9
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 5.1e-20 102.8 398 26.9
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 5.1e-20 102.8 253 36.0
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 6.6e-20 102.4 409 29.6
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 8.6e-20 102.1 413 28.6
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 8.6e-20 102.1 411 27.0
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 1.9e-19 100.9 405 27.9
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.5e-19 100.5 404 23.8
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 3.3e-19 100.1 402 25.1
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 7.3e-19 99.0 381 24.9
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.6e-18 97.8 424 26.4
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 1.6e-18 97.8 406 28.3
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 1.6e-18 97.8 424 25.5
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 1.6e-18 97.8 400 27.0
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 3.6e-18 96.7 379 24.5
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 8.1e-18 95.5 402 26.4
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.1e-17 95.1 429 26.8
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 2.3e-17 94.0 397 26.7
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 2.3e-17 94.0 400 29.2
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 3.1e-17 93.6 426 25.1
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 5.2e-17 92.8 409 26.7
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 5.2e-17 92.8 427 25.3
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 8.9e-17 92.0 398 27.6
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 8.9e-17 92.0 451 26.8
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.2e-16 91.7 431 28.1
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 3.4e-16 90.1 400 26.0
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 4.4e-16 89.7 438 25.3
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 9.9e-16 88.6 500 24.0
DCAR_013061 Daucus carota HOM05D004563 ORTHO05D002944 1.7e-15 87.8 402 26.9
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 2.2e-15 87.4 388 26.8
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 3.7e-15 86.7 399 26.6
Oeu013689.1 Olea europaea HOM05D004563 ORTHO05D002944 3.7e-15 86.7 120 44.2
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea HOM05D004563 ORTHO05D002944 6.4e-15 85.9 395 25.1
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.1e-14 85.1 394 25.4
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.4e-14 84.7 468 23.7
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.9e-14 84.3 404 25.2
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 3.2e-14 83.6 470 23.4
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 4.1e-14 83.2 390 27.9
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 5.4e-14 82.8 395 25.8
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 9.2e-14 82.0 334 26.3
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 1.2e-13 81.6 366 27.3
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 2.1e-13 80.9 360 27.5
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 6.0e-13 79.3 393 24.9
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.3e-12 78.2 93 48.4
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.7e-12 77.8 355 27.0
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 1.7e-12 77.8 385 25.5
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 2.3e-12 77.4 116 37.9
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.3e-12 77.4 436 24.3
Lalb_Chr14g0367401 Lupinus albus HOM05D004563 ORTHO05D002944 3.0e-12 77.0 383 26.9
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 5.1e-12 76.3 397 25.7
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.1e-11 75.1 398 24.4
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 1.9e-11 74.3 346 26.3
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 1.9e-11 74.3 468 22.6
Lj3g0023253 Lotus japonicus HOM05D004563 ORTHO05D002944 1.9e-11 74.3 405 26.4
COL.COLO4_33545 Corchorus olitorius HOM05D004563 ORTHO05D002944 3.3e-11 73.6 119 39.5
Lalb_Chr03g0029881 Lupinus albus HOM05D004563 ORTHO05D002944 3.3e-11 73.6 422 25.1
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 7.3e-11 72.4 402 25.6
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 7.3e-11 72.4 130 35.4
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 7.3e-11 72.4 371 23.7
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 7.3e-11 72.4 464 24.4
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 9.6e-11 72.0 345 26.1
BcaB06g28496 Brassica carinata HOM05D004563 ORTHO05D002944 1.6e-10 71.2 365 26.3
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 2.1e-10 70.9 93 38.7
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 2.1e-10 70.9 432 25.5
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.1e-10 70.9 88 38.6
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 2.8e-10 70.5 158 31.6
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 3.6e-10 70.1 352 26.7
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 3.6e-10 70.1 352 26.7
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.6e-10 70.1 147 31.3
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 3.6e-10 70.1 117 35.9
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 4.7e-10 69.7 417 26.6
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 6.2e-10 69.3 350 25.1
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 6.2e-10 69.3 345 26.7
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 6.2e-10 69.3 141 31.9
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 8.1e-10 68.9 126 35.7
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 8.1e-10 68.9 344 24.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 8.1e-10 68.9 131 38.2
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 1.1e-09 68.6 124 33.9
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 1.4e-09 68.2 360 25.6
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 1.4e-09 68.2 384 24.7
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 1.8e-09 67.8 395 25.1
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 3.1e-09 67.0 405 25.4
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.1e-09 67.0 185 29.2
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.0e-09 66.6 340 23.8
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 6.8e-09 65.9 352 24.4
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 8.9e-09 65.5 107 36.4
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 1.2e-08 65.1 241 28.2
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.0e-08 64.3 337 23.1
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 2.0e-08 64.3 59 50.8
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 2.0e-08 64.3 93 38.7
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 2.6e-08 63.9 59 50.8
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 2.6e-08 63.9 59 50.8
AUR62038995 Chenopodium quinoa HOM05D007922 ORTHO05D009490 3.4e-08 63.5 139 31.7
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 7.6e-08 62.4 334 24.9
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 7.6e-08 62.4 402 23.1
Lalb_Chr19g0134931 Lupinus albus HOM05D004563 ORTHO05D002944 7.6e-08 62.4 61 45.9
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 9.9e-08 62.0 59 49.2
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 9.9e-08 62.0 366 26.2
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 9.9e-08 62.0 105 36.2
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 1.3e-07 61.6 58 50.0
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.3e-07 61.6 194 28.9
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 1.3e-07 61.6 161 30.4
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-07 61.2 292 23.3
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.7e-07 61.2 160 34.4
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 2.2e-07 60.8 193 31.1
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 2.9e-07 60.5 68 44.1
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 2.9e-07 60.5 104 35.6
RcHm_v2.0_Chr2g0128481 Rosa chinensis HOM05D004563 ORTHO05D002944 2.9e-07 60.5 61 47.5
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 3.8e-07 60.1 69 42.0
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 3.8e-07 60.1 69 42.0
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 3.8e-07 60.1 69 42.0
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 3.8e-07 60.1 493 23.7
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 4.9e-07 59.7 189 27.5
Glyma.12G209700 Glycine max HOM05D004563 ORTHO05D002944 6.4e-07 59.3 412 23.5
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 6.4e-07 59.3 106 37.7
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 8.4e-07 58.9 62 43.5
TPR.G29469 Trifolium pratense HOM05D004563 ORTHO05D002944 1.1e-06 58.5 96 40.6
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.1e-06 58.5 96 39.6
CAN.G456.28 Capsicum annuum HOM05D004563 ORTHO05D002944 1.4e-06 58.2 260 24.6
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.4e-06 58.2 386 25.4
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.9e-06 57.8 90 37.8
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 2.4e-06 57.4 152 28.9
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 2.4e-06 57.4 116 34.5
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 2.4e-06 57.4 60 43.3
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 3.2e-06 57.0 188 28.7
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 4.2e-06 56.6 372 24.7
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 5.4e-06 56.2 300 24.3
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 7.1e-06 55.8 115 33.9
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 7.1e-06 55.8 86 31.4
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.3e-06 55.5 89 31.5
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 9.3e-06 55.5 89 31.5
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 9.3e-06 55.5 108 38.0


User provided reference genes

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