Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09153 Vaccinium macrocarpon HOM05D002559 ORTHO05D007057 5.0e-42 174.1 92 100.0
Rhsim04G0086200 Rhododendron simsii HOM05D002559 ORTHO05D007057 5.9e-27 124.0 79 82.3
Actinidia17309 Actinidia chinensis HOM05D002559 ORTHO05D007057 1.0e-26 123.2 79 83.5
Hma1.2p1_0183F.1_g080980 Hydrangea macrophylla HOM05D002559 ORTHO05D007057 1.1e-25 119.8 78 82.1
Actinidia38620 Actinidia chinensis HOM05D002559 ORTHO05D007057 1.5e-25 119.4 76 81.6
PGR042G3247 Punica granatum HOM05D002559 ORTHO05D007057 2.5e-25 118.6 80 78.8
TAR369G0085 Trochodendron aralioides HOM05D002559 ORTHO05D007057 2.5e-25 118.6 78 78.2
CSS0010834 Camellia sinensis var. sinensis HOM05D002559 ORTHO05D007057 4.2e-25 117.9 79 78.5
QL05p033446 Quercus lobata HOM05D002559 ORTHO05D007057 9.4e-25 116.7 76 78.9
DCAR_019888 Daucus carota HOM05D002559 ORTHO05D007057 1.2e-24 116.3 78 80.8
CiPaw.09G000700 Carya illinoinensis HOM05D002559 ORTHO05D007057 1.6e-24 115.9 78 78.2
Duzib128G1749 Durio zibethinus HOM05D002559 ORTHO05D007057 1.6e-24 115.9 78 75.6
Nitab4.5_0002741g0030 Nicotiana tabacum HOM05D002559 ORTHO05D007057 1.6e-24 115.9 79 77.2
Peaxi162Scf00076g00818 Petunia axillaris HOM05D002559 ORTHO05D007057 1.6e-24 115.9 79 78.5
Nn7g35814 Nelumbo nucifera HOM05D002559 ORTHO05D007057 2.7e-24 115.2 79 78.5
Sopen08g027110 Solanum pennellii HOM05D002559 ORTHO05D007057 2.7e-24 115.2 79 75.9
TWI32G0130 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 2.7e-24 115.2 78 76.9
Duzib177G0252 Durio zibethinus HOM05D002559 ORTHO05D007057 3.6e-24 114.8 78 76.9
Cfa016430 Carpinus fangiana HOM05D002559 ORTHO05D007057 8.0e-24 113.6 78 76.9
ECA248G1300 Erigeron canadensis HOM05D002559 ORTHO05D007057 8.0e-24 113.6 79 77.2
Potri.001G023000 Populus trichocarpa HOM05D002559 ORTHO05D007057 8.0e-24 113.6 78 76.9
Prupe.1G559200 Prunus persica HOM05D002559 ORTHO05D007057 1.4e-23 112.8 78 74.4
HanXRQChr01g0024871 Helianthus annuus HOM05D002559 ORTHO05D007057 1.8e-23 112.5 80 76.2
Peaxi162Scf00174g00130 Petunia axillaris HOM05D002559 ORTHO05D007057 1.8e-23 112.5 76 77.6
Thecc.05G254500 Theobroma cacao HOM05D002559 ORTHO05D007057 1.8e-23 112.5 78 74.4
MBI13_g37425_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007057 3.0e-23 111.7 78 78.2
Manes.07G112700 Manihot esculenta HOM05D002559 ORTHO05D007057 3.0e-23 111.7 77 72.7
Manes.08G148900 Manihot esculenta HOM05D002559 ORTHO05D007057 3.0e-23 111.7 77 76.6
MD12G1001600 Malus domestica HOM05D002559 ORTHO05D007057 5.2e-23 110.9 78 73.1
RcHm_v2.0_Chr7g0213231 Rosa chinensis HOM05D002559 ORTHO05D007057 5.2e-23 110.9 79 73.4
RcHm_v2.0_Chr1g0332111 Rosa chinensis HOM05D002559 ORTHO05D007057 6.8e-23 110.5 78 74.4
Psat0s2993g0320 Pisum sativum HOM05D002559 ORTHO05D007057 8.8e-23 110.2 75 76.0
arahy.Tifrunner.gnm1.ann1.1FX2LZ Arachis hypogaea HOM05D002559 ORTHO05D007057 1.2e-22 109.8 75 74.7
arahy.Tifrunner.gnm1.ann1.XAZK7H Arachis hypogaea HOM05D002559 ORTHO05D007057 1.2e-22 109.8 75 74.7
Phvul.011G094200 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 1.2e-22 109.8 75 77.3
CAN.G1058.25 Capsicum annuum HOM05D002559 ORTHO05D007057 1.5e-22 109.4 79 75.9
CDE09G1258 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 1.5e-22 109.4 71 76.1
FvH4_5g23840 Fragaria vesca HOM05D002559 ORTHO05D007057 2.0e-22 109.0 79 70.9
Sc05g0008220 Simmondsia chinensis HOM05D002559 ORTHO05D007057 2.0e-22 109.0 75 77.3
TWI60G1607 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 2.0e-22 109.0 78 71.8
Lj3g0010749 Lotus japonicus HOM05D002559 ORTHO05D007057 2.6e-22 108.6 75 74.7
Cc00_g05200 Coffea canephora HOM05D002559 ORTHO05D007057 3.4e-22 108.2 79 79.7
AUR62014664 Chenopodium quinoa HOM05D002559 ORTHO05D007057 4.4e-22 107.8 76 75.0
MD14G1001500 Malus domestica HOM05D002559 ORTHO05D007057 5.7e-22 107.5 78 73.1
AUR62012531 Chenopodium quinoa HOM05D002559 ORTHO05D007057 7.5e-22 107.1 76 75.0
Hund23574 Selenicereus undatus HOM05D002559 ORTHO05D007057 7.5e-22 107.1 78 73.1
Ah.15g090300 Amaranthus hybridus HOM05D002559 ORTHO05D007057 1.3e-21 106.3 76 73.7
CANSAT78G1541 Cannabis sativa HOM05D002559 ORTHO05D007057 1.3e-21 106.3 80 71.2
Ca_19406_v3 Cicer arietinum L. HOM05D002559 ORTHO05D007057 1.3e-21 106.3 75 74.7
Duzib128G1541 Durio zibethinus HOM05D002559 ORTHO05D007057 1.3e-21 106.3 78 70.5
EL10Ac7g17037 Beta vulgaris HOM05D002559 ORTHO05D007057 1.7e-21 105.9 76 75.0
CDE02G0936 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 1.7e-21 105.9 75 73.3
AT3G04040 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 2.8e-21 105.1 78 75.6
AL3G13950 Arabidopsis lyrata HOM05D002559 ORTHO05D007057 3.7e-21 104.8 77 72.7
Medtr4g053290 Medicago truncatula HOM05D002559 ORTHO05D007057 8.3e-21 103.6 75 73.3
ECA240G0207 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.1e-20 103.2 80 70.0
Ciclev10022656m.g Citrus clementina HOM05D002559 ORTHO05D007057 1.4e-20 102.8 58 84.5
CARHR194810 Cardamine hirsuta HOM05D002559 ORTHO05D007057 2.4e-20 102.1 74 71.6
Nitab4.5_0004741g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007057 2.4e-20 102.1 79 70.9
Sp6g26070 Schrenkiella parvula HOM05D002559 ORTHO05D007057 2.4e-20 102.1 74 73.0
ATR0789G037 Amborella trichopoda HOM05D002559 ORTHO05D007057 5.4e-20 100.9 56 85.7
Thhalv10014906m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 5.4e-20 100.9 74 71.6
Aqoxy1G03079 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 7.0e-20 100.5 61 78.7
PGSC0003DMG400011890 Solanum tuberosum HOM05D002559 ORTHO05D007057 7.0e-20 100.5 71 73.2
Atru.chr2.1303 Acer truncatum HOM05D002559 ORTHO05D007057 1.2e-19 99.8 79 65.8
Aqoxy4G00339 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 1.2e-19 99.8 57 84.2
AL6G29470 Arabidopsis lyrata HOM05D002559 ORTHO05D007057 1.2e-19 99.8 73 72.6
AT5G18250 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 1.2e-19 99.8 73 72.6
BcaNung07325 Brassica carinata HOM05D002559 ORTHO05D007057 1.2e-19 99.8 74 70.3
BcaB01g05183 Brassica carinata HOM05D002559 ORTHO05D007057 1.6e-19 99.4 75 70.7
CsaV3_4G027570 Cucumis sativus L. HOM05D002559 ORTHO05D007057 1.6e-19 99.4 75 70.7
Glyma.12G184600 Glycine max HOM05D002559 ORTHO05D007057 2.0e-19 99.0 73 74.0
A03p08750 Brassica napus HOM05D002559 ORTHO05D007057 2.7e-19 98.6 74 68.9
SGA_v2.0_scaffold114G31944 Striga asiatica HOM05D002559 ORTHO05D007057 2.7e-19 98.6 59 79.7
A10p21270 Brassica napus HOM05D002559 ORTHO05D007057 3.5e-19 98.2 74 70.3
BraA10t44190Z Brassica rapa HOM05D002559 ORTHO05D007057 3.5e-19 98.2 74 70.3
Dinv36936 Davidia involucrata HOM05D002559 ORTHO05D007057 3.5e-19 98.2 79 65.8
Oeu003637.1 Olea europaea HOM05D002559 ORTHO05D010382 3.5e-19 98.2 55 80.0
Phvul.005G124000 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 3.5e-19 98.2 69 76.8
Carub.0006s1654 Capsella rubella HOM05D002559 ORTHO05D007057 4.5e-19 97.8 73 71.2
Aa31LG11G11330 Aethionema arabicum HOM05D002559 ORTHO05D007057 5.9e-19 97.4 74 74.3
Os01g0264500 Oryza sativa ssp. japonica HOM05D002559 ORTHO05D007057 5.9e-19 97.4 76 65.8
HPP92_021154 Vanilla planifolia HOM05D002559 ORTHO05D007057 5.9e-19 97.4 79 67.1
Migut.D02466 Erythranthe guttata HOM05D002559 ORTHO05D007057 1.0e-18 96.7 63 74.6
BolC9t58714H Brassica oleracea HOM05D002559 ORTHO05D007057 1.3e-18 96.3 74 68.9
Gohir.A11G237800 Gossypium hirsutum HOM05D002559 ORTHO05D007057 1.3e-18 96.3 79 67.1
Gohir.D11G248300 Gossypium hirsutum HOM05D002559 ORTHO05D007057 1.3e-18 96.3 79 67.1
BcaC04g18713 Brassica carinata HOM05D002559 ORTHO05D007057 1.7e-18 95.9 74 67.6
C09p58730 Brassica napus HOM05D002559 ORTHO05D007057 1.7e-18 95.9 74 67.6
Thhalv10021750m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 1.7e-18 95.9 67 71.6
VMungo1127G1947 Vigna mungo HOM05D002559 ORTHO05D007057 1.7e-18 95.9 61 75.4
CsaV3_6G053220 Cucumis sativus L. HOM05D002559 ORTHO05D007057 2.2e-18 95.5 72 68.1
Sed0022774 Sechium edule HOM05D002559 ORTHO05D007057 3.8e-18 94.7 66 72.7
BcaB08g36692 Brassica carinata HOM05D002559 ORTHO05D007057 6.5e-18 94.0 74 70.3
PSO339G2988 Papaver somniferum HOM05D002559 ORTHO05D007057 6.5e-18 94.0 82 67.1
PSO384G4200 Papaver somniferum HOM05D002559 ORTHO05D007057 6.5e-18 94.0 80 68.8
MSTRG.18809 Avicennia marina HOM05D002559 ORTHO05D007057 8.5e-18 93.6 54 77.8
Nn2g15893 Nelumbo nucifera HOM05D002559 ORTHO05D007057 9.5e-17 90.1 50 84.0
PSO541G3435 Papaver somniferum HOM05D002559 ORTHO05D007057 9.5e-17 90.1 82 64.6
Lalb_Chr00c36g0408721 Lupinus albus HOM05D002559 ORTHO05D007057 1.2e-16 89.7 57 75.4
Lsat_1_v5_gn_1_58880 Lactuca sativa HOM05D002559 ORTHO05D007057 1.6e-16 89.4 76 65.8
TAR623G1558 Trochodendron aralioides HOM05D002559 ORTHO05D007057 1.6e-16 89.4 78 62.8
Gorai.007G264600 Gossypium raimondii HOM05D002559 ORTHO05D007057 2.1e-16 89.0 80 62.5
THA.LOC104827263 Tarenaya hassleriana HOM05D002559 ORTHO05D007057 2.8e-16 88.6 48 87.5
SGA_v2.0_scaffold261G45917 Striga asiatica HOM05D002559 ORTHO05D007057 6.1e-16 87.4 59 71.2
unitig_748.g7790 Utricularia gibba HOM05D002559 ORTHO05D007057 2.3e-15 85.5 58 70.7
GSVIVG01033380001 Vitis vinifera HOM05D002559 ORTHO05D007057 4.0e-15 84.7 75 62.7
Zm00001eb333270 Zea mays HOM05D002559 ORTHO05D007057 1.2e-14 83.2 91 53.8
Glyma.13G316700 Glycine max HOM05D002559 ORTHO05D007057 2.2e-13 79.0 42 90.5
FAN13G0924 Fragaria x ananassa HOM05D002559 ORTHO05D007057 6.3e-13 77.4 79 60.8
Dinv37005 Davidia involucrata HOM05D002559 ORTHO05D007057 3.5e-11 71.6 36 83.3
Mapoly0006s0258 Marchantia polymorpha HOM05D002559 ORTHO05D007057 3.5e-11 71.6 60 58.3
Lalb_Chr24g0392961 Lupinus albus HOM05D002559 ORTHO05D007057 5.9e-11 70.9 37 83.8
COL.COLO4_36028 Corchorus olitorius HOM05D000211 ORTHO05D002682 1.3e-10 69.7 34 85.3
QL11p027350 Quercus lobata HOM05D002559 ORTHO05D007057 6.6e-10 67.4 44 72.7
C03p10180 Brassica napus HOM05D002559 ORTHO05D007057 1.9e-09 65.9 79 48.1
BolC3t13503H Brassica oleracea HOM05D002559 ORTHO05D007057 1.9e-09 65.9 79 48.1
BraA03t10196Z Brassica rapa HOM05D002559 ORTHO05D007057 1.9e-09 65.9 79 48.1
ClCG04G002960 Citrullus lanatus HOM05D002559 ORTHO05D007057 6.1e-08 60.8 57 64.9
Nn7g35948 Nelumbo nucifera HOM05D002559 ORTHO05D007687 1.4e-07 59.7 55 52.7
FAN18G1439 Fragaria x ananassa HOM05D002559 ORTHO05D007057 4.0e-07 58.2 79 49.4
FAN18G2545 Fragaria x ananassa HOM05D002559 ORTHO05D007057 4.0e-07 58.2 79 49.4
Carub.0006s1632 Capsella rubella HOM05D002559 ORTHO05D007057 5.2e-07 57.8 73 50.7
Nitab4.5_0000698g0050 Nicotiana tabacum HOM05D002559 ORTHO05D007687 5.2e-07 57.8 55 50.9
Peaxi162Scf00003g04618 Petunia axillaris HOM05D002559 ORTHO05D007687 5.2e-07 57.8 55 50.9
Lsat_1_v5_gn_2_56540 Lactuca sativa HOM05D002559 ORTHO05D007687 8.9e-07 57.0 55 49.1
PGSC0003DMG400007534 Solanum tuberosum HOM05D002559 ORTHO05D007687 8.9e-07 57.0 55 50.9
Nitab4.5_0000358g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007687 1.2e-06 56.6 75 45.3
PGSC0003DMG400011423 Solanum tuberosum HOM05D002559 ORTHO05D007687 1.2e-06 56.6 52 50.0
HPP92_003743 Vanilla planifolia HOM05D002559 ORTHO05D007687 1.2e-06 56.6 55 47.3
Actinidia22059 Actinidia chinensis HOM05D002559 ORTHO05D007687 1.5e-06 56.2 55 49.1
Migut.J01857 Erythranthe guttata HOM05D002559 ORTHO05D007687 1.5e-06 56.2 55 47.3
ECA238G4539 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 55.8 55 47.3
HanXRQChr14g0438201 Helianthus annuus HOM05D002559 ORTHO05D007687 2.0e-06 55.8 55 49.1
Rhsim03G0003900 Rhododendron simsii HOM05D002559 ORTHO05D007687 2.0e-06 55.8 73 46.6
Solyc01g099730.3 Solanum lycopersicum HOM05D002559 ORTHO05D007687 2.0e-06 55.8 55 49.1
Sopen01g043250 Solanum pennellii HOM05D002559 ORTHO05D007687 2.0e-06 55.8 55 49.1
vmacro07884 Vaccinium macrocarpon HOM05D002559 ORTHO05D007687 2.0e-06 55.8 55 50.9
Cc06_g15580 Coffea canephora HOM05D002559 ORTHO05D007687 3.4e-06 55.1 75 44.0
Oeu046718.1 Olea europaea HOM05D002559 ORTHO05D007687 3.4e-06 55.1 55 49.1
DCAR_009691 Daucus carota HOM05D002559 ORTHO05D007687 4.4e-06 54.7 55 47.3
Dinv24051 Davidia involucrata HOM05D002559 ORTHO05D007687 4.4e-06 54.7 55 49.1
Sc19g0006130 Simmondsia chinensis HOM05D002559 ORTHO05D007687 4.4e-06 54.7 55 49.1
Solyc09g065930.4 Solanum lycopersicum HOM05D002559 ORTHO05D007687 5.7e-06 54.3 55 47.3
Sopen09g027720 Solanum pennellii HOM05D002559 ORTHO05D007687 5.7e-06 54.3 55 47.3
GSVIVG01033456001 Vitis vinifera HOM05D002559 ORTHO05D007687 5.7e-06 54.3 55 43.6
MSTRG.6495 Avicennia marina HOM05D002559 ORTHO05D007687 7.5e-06 53.9 55 45.5
CANSAT64G2998 Cannabis sativa HOM05D002559 ORTHO05D007687 7.5e-06 53.9 55 49.1
DCAR_019859 Daucus carota HOM05D002559 ORTHO05D007687 7.5e-06 53.9 55 47.3
MBI19_g17432_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007687 7.5e-06 53.9 55 47.3


User provided reference genes

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