Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09139 Vaccinium macrocarpon HOM05D002486 ORTHO05D002606 6.6e-84 313.9 152 100.0
Rhsim04G0087700 Rhododendron simsii HOM05D002486 ORTHO05D002606 6.8e-28 127.9 151 50.3
Sabra19G0042700 Salix brachista HOM05D002486 ORTHO05D002606 4.7e-21 105.1 151 43.7
Actinidia17304 Actinidia chinensis HOM05D002486 ORTHO05D002606 6.1e-21 104.8 151 43.7
GSVIVG01001063001 Vitis vinifera HOM05D002486 ORTHO05D002606 1.4e-20 103.6 151 43.0
Sabra19G0045000 Salix brachista HOM05D002486 ORTHO05D002606 2.3e-20 102.8 151 43.0
Actinidia38614 Actinidia chinensis HOM05D002486 ORTHO05D002606 3.0e-20 102.4 152 43.4
CSS0028749 Camellia sinensis var. sinensis HOM05D002486 ORTHO05D002606 3.0e-20 102.4 151 43.0
Potri.013G058200 Populus trichocarpa HOM05D002486 ORTHO05D002606 6.8e-20 101.3 151 41.7
QL07p019482 Quercus lobata HOM05D002486 ORTHO05D002606 1.5e-19 100.1 151 42.4
CSS0015391 Camellia sinensis var. sinensis HOM05D002486 ORTHO05D002606 2.0e-19 99.8 151 42.4
Manes.09G141300 Manihot esculenta HOM05D002486 ORTHO05D002606 9.8e-19 97.4 151 39.1
Potri.019G035000 Populus trichocarpa HOM05D002486 ORTHO05D002606 2.2e-18 96.3 151 41.1
Sabra13G0051700 Salix brachista HOM05D002486 ORTHO05D002606 4.9e-18 95.1 151 40.4
Cpa.g.sc51.116 Carica papaya HOM05D002486 ORTHO05D002606 4.1e-17 92.0 152 40.1
TPR.G9137 Trifolium pratense HOM05D002486 ORTHO05D002606 4.5e-16 88.6 151 39.1
Ciclev10022769m.g Citrus clementina HOM05D002486 ORTHO05D002606 7.8e-16 87.8 146 41.1
Duzib128G1093 Durio zibethinus HOM05D002486 ORTHO05D002606 1.0e-15 87.4 153 37.9
Gohir.A11G259700 Gossypium hirsutum HOM05D002486 ORTHO05D002606 1.0e-15 87.4 152 38.2
Sc06g0000380 Simmondsia chinensis HOM05D002486 ORTHO05D002606 1.3e-15 87.0 151 37.7
Gorai.007G289900 Gossypium raimondii HOM05D002486 ORTHO05D002606 1.7e-15 86.7 152 38.2
Thecc.05G294700 Theobroma cacao HOM05D002486 ORTHO05D002606 1.7e-15 86.7 151 37.1
TAR623G1300 Trochodendron aralioides HOM05D002486 ORTHO05D002606 2.3e-15 86.3 153 38.6
Manes.08G144400 Manihot esculenta HOM05D002486 ORTHO05D002606 2.9e-15 85.9 144 38.2
Gohir.D11G269800 Gossypium hirsutum HOM05D002486 ORTHO05D002606 3.8e-15 85.5 151 37.1
Atru.chr2.1382 Acer truncatum HOM05D002486 ORTHO05D002606 5.0e-15 85.1 146 38.4
Medtr6g029390 Medicago truncatula HOM05D002486 ORTHO05D002606 8.6e-15 84.3 151 37.7
Haze_19449 Corylus avellana HOM05D002486 ORTHO05D002606 1.1e-14 84.0 152 38.2
Psat1g092160 Pisum sativum HOM05D002486 ORTHO05D002606 1.1e-14 84.0 151 37.1
Haze_19420 Corylus avellana HOM05D002486 ORTHO05D002606 1.5e-14 83.6 152 38.8
COL.COLO4_13595 Corchorus olitorius HOM05D002486 ORTHO05D002606 1.9e-14 83.2 154 37.7
MD12G1003700 Malus domestica HOM05D002486 ORTHO05D002606 1.9e-14 83.2 145 37.2
DCAR_017052 Daucus carota HOM05D002486 ORTHO05D002606 2.5e-14 82.8 148 36.5
Cfa016443 Carpinus fangiana HOM05D002486 ORTHO05D002606 3.3e-14 82.4 152 38.2
Duzib177G0910 Durio zibethinus HOM05D002486 ORTHO05D002606 3.3e-14 82.4 147 37.4
Duzib177G1131 Durio zibethinus HOM05D002486 ORTHO05D002606 3.3e-14 82.4 147 37.4
Glyma.16G153500 Glycine max HOM05D002486 ORTHO05D002606 4.3e-14 82.0 151 35.1
Glyma.02G072300 Glycine max HOM05D002486 ORTHO05D002606 9.5e-14 80.9 151 36.4
Gohir.A11G296400 Gossypium hirsutum HOM05D002486 ORTHO05D002606 9.5e-14 80.9 154 35.7
EL10Ac3g06824 Beta vulgaris HOM05D002486 ORTHO05D002606 1.6e-13 80.1 153 36.6
Nitab4.5_0000394g0010 Nicotiana tabacum HOM05D002486 ORTHO05D002606 1.6e-13 80.1 151 36.4
THA.LOC104820773 Tarenaya hassleriana HOM05D002486 ORTHO05D002606 1.6e-13 80.1 144 35.4
CiPaw.10G001000 Carya illinoinensis HOM05D002486 ORTHO05D002606 2.1e-13 79.7 141 39.0
MD14G1002600 Malus domestica HOM05D002486 ORTHO05D002606 2.1e-13 79.7 143 39.2
Phvul.004G080100 Phaseolus vulgaris HOM05D002486 ORTHO05D002606 2.8e-13 79.3 151 35.8
PGR042G1972 Punica granatum HOM05D002486 ORTHO05D002606 2.8e-13 79.3 151 35.1
Hund19234 Selenicereus undatus HOM05D002486 ORTHO05D002606 2.8e-13 79.3 148 37.2
TWI32G0446 Tripterygium wilfordii HOM05D002486 ORTHO05D002606 3.6e-13 79.0 146 38.4
CARHR194910 Cardamine hirsuta HOM05D002486 ORTHO05D002606 4.7e-13 78.6 144 38.2
DCAR_013687 Daucus carota HOM05D002486 ORTHO05D002606 6.1e-13 78.2 151 34.4
Medtr5g098200 Medicago truncatula HOM05D002486 ORTHO05D002606 6.1e-13 78.2 146 37.0
Ah.04g153170 Amaranthus hybridus HOM05D002486 ORTHO05D002606 1.4e-12 77.0 153 37.3
Sp6g26160 Schrenkiella parvula HOM05D002486 ORTHO05D002606 1.4e-12 77.0 144 36.8
Carub.0006s1278 Capsella rubella HOM05D002486 ORTHO05D002606 1.8e-12 76.6 143 37.1
HanXRQChr02g0054231 Helianthus annuus HOM05D002486 ORTHO05D002606 2.3e-12 76.3 151 32.5
Nn2g15866 Nelumbo nucifera HOM05D002486 ORTHO05D002606 2.3e-12 76.3 153 35.9
Lalb_Chr06g0173991 Lupinus albus HOM05D002486 ORTHO05D002606 3.0e-12 75.9 141 36.9
arahy.Tifrunner.gnm1.ann1.GK9JFI Arachis hypogaea HOM05D002486 ORTHO05D002606 4.0e-12 75.5 151 34.4
BolC2t06881H Brassica oleracea HOM05D002486 ORTHO05D002606 4.0e-12 75.5 148 37.8
AL6G29350 Arabidopsis lyrata HOM05D002486 ORTHO05D002606 5.2e-12 75.1 144 35.4
Carub.0006s1644 Capsella rubella HOM05D002486 ORTHO05D002606 5.2e-12 75.1 144 35.4
Eucgr.A02098 Eucalyptus grandis HOM05D002486 ORTHO05D002606 5.2e-12 75.1 144 38.9
Lalb_Chr02g0157121 Lupinus albus HOM05D002486 ORTHO05D002606 5.2e-12 75.1 147 38.1
arahy.Tifrunner.gnm1.ann1.CLS04B Arachis hypogaea HOM05D002486 ORTHO05D002606 6.8e-12 74.7 151 34.4
Oeu024504.1 Olea europaea HOM05D002486 ORTHO05D002606 6.8e-12 74.7 150 34.0
GSVIVG01033404001 Vitis vinifera HOM05D002486 ORTHO05D002606 8.9e-12 74.3 142 35.9
AUR62032697 Chenopodium quinoa HOM05D002486 ORTHO05D002606 1.2e-11 73.9 153 35.3
Peaxi162Scf00463g00001 Petunia axillaris HOM05D002486 ORTHO05D002606 1.2e-11 73.9 149 37.6
Solyc06g075190.1 Solanum lycopersicum HOM05D002486 ORTHO05D002606 1.2e-11 73.9 143 35.7
Sopen06g031600 Solanum pennellii HOM05D002486 ORTHO05D002606 1.2e-11 73.9 143 35.7
AT5G18150 Arabidopsis thaliana HOM05D002486 ORTHO05D002606 1.5e-11 73.6 144 34.7
BcaC03g13580 Brassica carinata HOM05D002486 ORTHO05D002606 1.5e-11 73.6 144 36.1
BcaC03g13581 Brassica carinata HOM05D002486 ORTHO05D002606 1.5e-11 73.6 144 36.1
AUR62032050 Chenopodium quinoa HOM05D002486 ORTHO05D002606 1.5e-11 73.6 153 35.3
Nitab4.5_0000626g0060 Nicotiana tabacum HOM05D002486 ORTHO05D002606 1.5e-11 73.6 147 36.7
Thhalv10015170m.g Eutrema salsugineum HOM05D002486 ORTHO05D002606 2.0e-11 73.2 144 37.5
Gohir.D11G310500 Gossypium hirsutum HOM05D002486 ORTHO05D002606 2.0e-11 73.2 152 33.6
CAN.G1001.29 Capsicum annuum HOM05D002486 ORTHO05D002606 2.6e-11 72.8 144 35.4
HanXRQChr13g0397721 Helianthus annuus HOM05D002486 ORTHO05D002606 2.6e-11 72.8 153 33.3
BraA02t05435Z Brassica rapa HOM05D002486 ORTHO05D002606 3.4e-11 72.4 144 35.4
Gorai.007G343300 Gossypium raimondii HOM05D002486 ORTHO05D002606 4.4e-11 72.0 154 33.1
BcaNung03112 Brassica carinata HOM05D002486 ORTHO05D002606 5.7e-11 71.6 145 35.2
A02p04760 Brassica napus HOM05D002486 ORTHO05D002606 5.7e-11 71.6 143 35.7
THA.LOC104827276 Tarenaya hassleriana HOM05D002486 ORTHO05D002606 5.7e-11 71.6 144 35.4
BcaB08g36701 Brassica carinata HOM05D002486 ORTHO05D002606 7.5e-11 71.2 150 34.7
PGSC0003DMG400003369 Solanum tuberosum HOM05D002486 ORTHO05D002606 7.5e-11 71.2 143 37.1
BcaC03g13463 Brassica carinata HOM05D002486 ORTHO05D002606 9.8e-11 70.9 141 36.2
CANSAT78G1855 Cannabis sativa HOM05D002486 ORTHO05D002606 9.8e-11 70.9 155 31.6
CARHR198710 Cardamine hirsuta HOM05D002486 ORTHO05D002606 9.8e-11 70.9 143 35.0
C09p58820 Brassica napus HOM05D002486 ORTHO05D002606 1.3e-10 70.5 144 37.5
BolC9t58726H Brassica oleracea HOM05D002486 ORTHO05D002606 1.3e-10 70.5 144 36.8
Migut.J01886 Erythranthe guttata HOM05D002486 ORTHO05D002606 1.3e-10 70.5 150 34.7
AT5G14602 Arabidopsis thaliana HOM05D002486 ORTHO05D002606 1.7e-10 70.1 145 35.2
Prupe.7G004200 Prunus persica HOM05D002486 ORTHO05D002606 1.7e-10 70.1 142 37.3
Cc06_g22980 Coffea canephora HOM05D002486 ORTHO05D002606 2.2e-10 69.7 145 34.5
BcaB05g23301 Brassica carinata HOM05D002486 ORTHO05D002606 2.9e-10 69.3 144 35.4
A03p08680 Brassica napus HOM05D002486 ORTHO05D002606 2.9e-10 69.3 149 34.9
Lsat_1_v5_gn_6_37000 Lactuca sativa HOM05D002486 ORTHO05D002606 2.9e-10 69.3 151 30.5
A02p02630 Brassica napus HOM05D002486 ORTHO05D002606 4.9e-10 68.6 141 34.8
BraA02t05232Z Brassica rapa HOM05D002486 ORTHO05D002606 6.4e-10 68.2 141 33.3
BcaC03g13465 Brassica carinata HOM05D002486 ORTHO05D002606 8.3e-10 67.8 141 34.0
Thhalv10015306m.g Eutrema salsugineum HOM05D002486 ORTHO05D002606 8.3e-10 67.8 140 35.0
MBI04_g38345_MAGBIO Magnolia biondii HOM05D002486 ORTHO05D002606 8.3e-10 67.8 149 36.2
A10p21350 Brassica napus HOM05D002486 ORTHO05D002606 1.1e-09 67.4 145 34.5
BolC3t13498H Brassica oleracea HOM05D002486 ORTHO05D002606 1.1e-09 67.4 143 34.3
BraA10t44198Z Brassica rapa HOM05D002486 ORTHO05D002606 1.1e-09 67.4 145 34.5
Phvul.001G110700 Phaseolus vulgaris HOM05D002486 ORTHO05D002606 1.1e-09 67.4 150 34.0
BcaNung03110 Brassica carinata HOM05D002486 ORTHO05D002606 1.4e-09 67.0 147 32.7
Lj1g0009743 Lotus japonicus HOM05D002486 ORTHO05D002606 1.8e-09 66.6 141 34.0
BolC2t06645H Brassica oleracea HOM05D002486 ORTHO05D002606 2.4e-09 66.2 144 34.0
BraA02t05231Z Brassica rapa HOM05D002486 ORTHO05D002606 2.4e-09 66.2 141 34.0
AL6G25370 Arabidopsis lyrata HOM05D002486 ORTHO05D002606 4.1e-09 65.5 148 33.8
BcaB01g06400 Brassica carinata HOM05D002486 ORTHO05D002606 4.1e-09 65.5 143 34.3
BcaB01g05178 Brassica carinata HOM05D002486 ORTHO05D002606 5.4e-09 65.1 143 33.6
C03p10120 Brassica napus HOM05D002486 ORTHO05D002606 5.4e-09 65.1 143 33.6
BraA03t10191Z Brassica rapa HOM05D002486 ORTHO05D002606 5.4e-09 65.1 143 33.6
BcaC03g13469 Brassica carinata HOM05D002486 ORTHO05D002606 7.0e-09 64.7 145 32.4
Dinv14577 Davidia involucrata HOM05D001630 ORTHO05D002606 7.0e-09 64.7 54 66.7
Glyma.19G112000 Glycine max HOM05D002486 ORTHO05D002606 7.0e-09 64.7 141 32.6
Aa31LG11G11450 Aethionema arabicum HOM05D002486 ORTHO05D002606 1.6e-08 63.5 145 33.1
CsaV3_4G013260 Cucumis sativus L. HOM05D002486 ORTHO05D002606 2.0e-08 63.2 140 35.7
Glyma.16G041100 Glycine max HOM05D002486 ORTHO05D002606 2.0e-08 63.2 141 32.6
TPR.G5914 Trifolium pratense HOM05D002486 ORTHO05D002606 2.0e-08 63.2 142 35.2
MELO3C008804.2 Cucumis melo HOM05D002486 ORTHO05D002606 2.7e-08 62.8 142 34.5
Ca_08265_v3 Cicer arietinum L. HOM05D002486 ORTHO05D002606 5.9e-08 61.6 141 32.6
Medtr7g085610 Medicago truncatula HOM05D002486 ORTHO05D002606 7.8e-08 61.2 141 33.3
BcaC03g13464 Brassica carinata HOM05D002486 ORTHO05D002606 1.7e-07 60.1 141 34.0
Mapoly0027s0077 Marchantia polymorpha HOM05D002486 ORTHO05D002606 1.7e-07 60.1 148 29.1
ClCG04G005330 Citrullus lanatus HOM05D002486 ORTHO05D002606 2.3e-07 59.7 140 32.9
C02p09720 Brassica napus HOM05D002486 ORTHO05D002606 6.6e-07 58.2 142 31.7
Atru.chr2.1386 Acer truncatum HOM05D002486 ORTHO05D002606 8.6e-07 57.8 47 66.0
Gohir.A13G171950 Gossypium hirsutum HOM05D002486 ORTHO05D002606 1.9e-06 56.6 146 30.8
HanXRQChr14g0438171 Helianthus annuus HOM05D002486 ORTHO05D002606 1.9e-06 56.6 151 28.5
Sed0026925 Sechium edule HOM05D002486 ORTHO05D002606 1.9e-06 56.6 140 32.1
Glyma.02G234900 Glycine max HOM05D002486 ORTHO05D002606 2.5e-06 56.2 142 29.6
TPR.G24952 Trifolium pratense HOM05D002486 ORTHO05D002606 2.5e-06 56.2 140 34.3
C02p07110 Brassica napus HOM05D002486 ORTHO05D002606 3.3e-06 55.8 55 54.5
BolC2t06644H Brassica oleracea HOM05D002486 ORTHO05D002606 3.3e-06 55.8 55 54.5
Lsat_1_v5_gn_5_175200 Lactuca sativa HOM05D002486 ORTHO05D002606 3.3e-06 55.8 140 33.6
Nn2g10356 Nelumbo nucifera HOM05D002486 ORTHO05D002606 5.6e-06 55.1 147 30.6
DCAR_019877 Daucus carota HOM05D002486 ORTHO05D002606 7.3e-06 54.7 142 29.6
Lalb_Chr18g0054341 Lupinus albus HOM05D002486 ORTHO05D002606 7.3e-06 54.7 140 30.7
Cc01_g15160 Coffea canephora HOM05D002486 ORTHO05D002606 9.5e-06 54.3 140 30.0
Gohir.D13G177800 Gossypium hirsutum HOM05D002486 ORTHO05D002606 9.5e-06 54.3 145 29.0
Gorai.013G203100 Gossypium raimondii HOM05D002486 ORTHO05D002606 9.5e-06 54.3 141 29.8
Lalb_Chr15g0085951 Lupinus albus HOM05D002486 ORTHO05D002606 9.5e-06 54.3 140 31.4


User provided reference genes

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