Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.0e-160 568.5 303 100.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.0e-87 326.6 318 64.8
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.3e-83 313.2 314 62.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.6e-83 311.6 312 60.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.0e-79 300.1 318 61.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.8e-65 253.1 311 54.3
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 8.1e-65 251.5 305 53.8
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.0e-64 249.2 310 57.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.8e-62 242.7 288 57.3
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-61 241.1 279 58.1
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 5.4e-61 238.8 311 51.4
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 3.6e-57 226.1 329 50.8
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.1e-53 214.5 292 51.4
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.7e-52 209.9 307 46.9
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 7.8e-52 208.4 310 49.4
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.9e-51 206.1 318 47.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 6.6e-51 205.3 311 47.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.9e-50 203.8 314 46.5
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.1e-49 200.3 312 47.1
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 6.2e-49 198.7 312 48.4
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.8e-47 192.2 318 46.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.2e-46 190.3 316 46.5
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.9e-46 189.9 311 45.7
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.9e-46 189.9 315 46.3
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 4.9e-46 189.1 316 45.3
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 4.9e-46 189.1 317 45.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.4e-46 188.7 316 45.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.1e-45 188.0 321 47.4
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.9e-45 187.2 313 46.0
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.4e-45 186.8 312 48.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 3.2e-45 186.4 316 46.8
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 4.2e-45 186.0 314 43.3
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.2e-45 186.0 313 45.4
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 5.4e-45 185.7 356 40.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 5.4e-45 185.7 310 46.5
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 7.1e-45 185.3 313 45.7
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.6e-44 184.1 312 45.5
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.1e-44 183.7 321 45.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 2.7e-44 183.3 314 43.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.7e-44 183.3 313 45.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.6e-44 182.6 314 43.6
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.0e-44 182.2 313 44.1
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 6.0e-44 182.2 310 46.1
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.9e-44 181.8 316 44.0
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.3e-43 180.3 315 43.2
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.0e-43 179.9 314 44.9
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.9e-43 179.5 308 46.8
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.1e-43 179.1 305 45.9
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.1e-43 179.1 316 45.9
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.1e-43 179.1 304 44.7
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 5.1e-43 179.1 306 46.1
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 8.7e-43 178.3 315 47.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-42 177.9 253 48.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.1e-42 177.9 317 46.7
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.3e-42 176.4 319 42.6
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.3e-42 176.4 316 46.8
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.3e-42 176.4 306 44.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.6e-42 174.9 231 53.2
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.6e-41 174.1 306 44.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.8e-41 172.6 317 47.3
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-40 171.0 307 44.0
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 3.1e-40 169.9 317 45.4
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.0e-40 169.5 317 46.7
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 5.3e-40 169.1 309 42.7
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 6.9e-40 168.7 318 42.1
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.5e-39 166.0 303 43.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 5.8e-39 165.6 319 44.2
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.2e-38 163.7 313 42.2
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.9e-38 163.3 311 43.7
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 6.4e-38 162.2 295 41.7
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.1e-37 161.4 317 42.0
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.1e-37 161.4 317 42.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.4e-37 160.2 308 43.5
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 4.6e-36 156.0 305 43.0
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 7.9e-36 155.2 313 41.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.8e-35 154.1 318 43.1
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 6.7e-35 152.1 258 43.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.1e-34 151.4 327 41.9
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.1e-34 151.4 312 39.7
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.5e-34 150.2 314 40.4
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 5.6e-34 149.1 310 39.0
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 7.4e-34 148.7 320 38.8
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.6e-33 147.5 313 39.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.1e-33 147.1 316 39.9
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-32 144.8 307 39.1
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-32 144.8 309 39.2
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.4e-32 144.4 309 38.8
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 4.0e-32 142.9 294 41.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 4.0e-32 142.9 316 42.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.3e-32 142.5 312 39.4
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.2e-31 141.4 316 40.8
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-31 141.4 309 41.7
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-31 141.4 309 41.7
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.5e-31 141.0 312 39.1
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.5e-31 141.0 310 38.1
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 4.5e-31 139.4 313 39.9
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 5.8e-31 139.0 307 41.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 5.8e-31 139.0 307 41.0
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 5.8e-31 139.0 309 41.4
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.8e-31 139.0 328 39.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-30 138.3 312 37.8
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.0e-30 138.3 306 40.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-30 138.3 306 40.2
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.0e-30 138.3 317 37.2
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.2e-30 137.1 306 40.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.2e-30 137.1 305 40.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 2.9e-30 136.7 312 38.1
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 3.8e-30 136.3 306 40.5
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 3.8e-30 136.3 306 40.5
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.8e-30 136.3 311 37.0
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 3.8e-30 136.3 359 33.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.5e-30 135.6 310 41.0
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.5e-30 135.6 310 41.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.1e-29 134.8 120 62.5
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.1e-29 134.8 305 39.3
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.4e-29 134.4 316 39.2
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.5e-29 133.7 306 39.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.2e-29 133.3 304 36.5
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 3.2e-29 133.3 305 38.7
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-29 132.1 199 47.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 9.3e-29 131.7 311 37.0
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.2e-28 131.3 305 38.4
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-28 131.3 306 39.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-28 131.3 305 40.3
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.6e-28 131.0 318 38.4
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-28 129.8 311 40.8
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-27 128.3 306 38.9
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.8e-27 127.5 310 40.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.8e-27 127.5 305 39.3
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.1e-26 124.8 310 39.7
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.5e-26 123.6 268 41.0
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-25 119.8 87 80.5
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 3.7e-25 119.8 304 36.8
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.8e-25 119.4 285 38.6
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 6.3e-25 119.0 307 38.8
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.4e-24 117.9 228 42.1
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.1e-24 116.7 307 36.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.0e-23 114.0 306 38.9
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 5.9e-23 112.5 303 38.0
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.0e-22 111.7 308 35.7
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.9e-22 110.2 315 34.3
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 6.5e-22 109.0 322 32.6
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.5e-21 107.1 198 43.4
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.2e-20 104.8 313 34.2
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 3.6e-20 103.2 333 34.8
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.9e-19 99.8 308 35.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 5.1e-19 99.4 333 34.8
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 6.7e-19 99.0 304 35.2
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.1e-18 98.2 310 34.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.5e-18 97.8 229 37.1
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.9e-18 97.4 301 33.6
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.3e-18 96.7 133 52.6
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 3.3e-18 96.7 182 40.7
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 3.7e-17 93.2 303 32.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.1e-16 90.1 101 54.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.3e-16 89.4 304 32.9
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.5e-15 87.8 292 31.5
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.5e-15 87.8 374 30.5
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.5e-15 86.3 227 37.4
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 4.5e-15 86.3 308 30.5
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.8e-14 83.2 303 30.4
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-13 81.3 309 32.7
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.2e-13 79.0 306 29.7
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 9.4e-13 78.6 318 32.1
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.7e-12 77.0 303 28.7
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.7e-12 76.3 307 30.3
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.8e-11 74.3 303 27.4
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.1e-11 72.8 307 29.3
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-10 71.6 71 53.5
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 2.0e-10 70.9 138 42.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 7.4e-10 68.9 304 28.3
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 9.7e-10 68.6 95 41.1
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.2e-09 67.4 84 51.2
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.1e-08 65.1 85 49.4
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 5.9e-07 59.3 106 49.1
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.7e-06 57.8 103 36.9
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 6.5e-06 55.8 259 31.3
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 6.5e-06 55.8 158 30.4


User provided reference genes

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