Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09068 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.3e-159 565.5 273 100.0
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.3e-122 443.4 317 72.2
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 3.3e-94 349.0 322 59.0
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 9.7e-94 347.4 322 58.4
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 4.8e-93 345.1 322 57.8
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 6.3e-93 344.7 322 58.1
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 6.3e-93 344.7 322 58.7
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 1.4e-92 343.6 322 57.8
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 1.8e-92 343.2 322 58.1
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 2.4e-92 342.8 322 57.1
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 3.1e-92 342.4 322 57.1
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 3.1e-92 342.4 322 57.8
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 3.1e-92 342.4 322 58.1
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 4.1e-92 342.0 322 57.5
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 4.1e-92 342.0 322 57.5
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 4.1e-92 342.0 322 57.5
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 4.1e-92 342.0 322 57.8
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.1
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 56.8
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 5.3e-92 341.7 322 57.8
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 9.1e-92 340.9 322 57.8
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 9.1e-92 340.9 322 57.8
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 9.1e-92 340.9 322 57.5
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 1.2e-91 340.5 322 56.8
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.2e-91 340.5 322 56.8
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.2e-91 340.5 322 57.1
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 1.2e-91 340.5 322 57.1
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.2e-91 340.5 322 57.1
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 1.6e-91 340.1 322 57.8
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 2.0e-91 339.7 322 56.8
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 2.0e-91 339.7 322 56.5
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.7e-91 339.3 322 56.5
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 2.7e-91 339.3 322 56.8
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 2.7e-91 339.3 322 57.1
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 2.7e-91 339.3 322 56.8
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.7e-91 339.3 322 57.1
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 3.5e-91 339.0 322 56.8
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 3.5e-91 339.0 322 57.1
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 3.5e-91 339.0 322 57.1
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.5e-91 338.6 322 57.5
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 4.5e-91 338.6 322 56.8
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 5.9e-91 338.2 322 57.1
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 5.9e-91 338.2 322 56.5
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 5.9e-91 338.2 322 56.8
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 5.9e-91 338.2 322 56.5
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 7.7e-91 337.8 322 56.8
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 7.7e-91 337.8 322 57.1
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 7.7e-91 337.8 322 57.1
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.0e-90 337.4 322 56.8
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.0e-90 337.4 322 56.2
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 1.0e-90 337.4 322 56.5
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.0e-90 337.4 322 56.8
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.3e-90 337.0 322 56.5
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.3e-90 337.0 322 57.1
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.3e-90 337.0 322 57.1
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 1.7e-90 336.7 322 56.5
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 1.7e-90 336.7 322 56.5
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 1.7e-90 336.7 322 56.5
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 1.7e-90 336.7 322 56.5
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 2.2e-90 336.3 322 56.2
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 2.2e-90 336.3 322 56.5
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 2.2e-90 336.3 322 56.5
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 2.9e-90 335.9 322 56.2
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 2.9e-90 335.9 322 56.5
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 2.9e-90 335.9 322 55.9
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 2.9e-90 335.9 322 55.9
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 3.8e-90 335.5 322 56.2
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 3.8e-90 335.5 322 56.2
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 3.8e-90 335.5 322 55.9
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 3.8e-90 335.5 322 56.5
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 3.8e-90 335.5 322 57.1
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 5.0e-90 335.1 322 56.2
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 6.5e-90 334.7 322 56.2
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 8.5e-90 334.3 322 56.8
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 8.5e-90 334.3 322 56.2
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 8.5e-90 334.3 322 56.8
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 8.5e-90 334.3 322 56.2
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 1.1e-89 334.0 322 55.9
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 1.5e-89 333.6 322 56.2
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 1.9e-89 333.2 322 56.2
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 2.5e-89 332.8 322 56.2
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 3.2e-89 332.4 326 56.4
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 3.2e-89 332.4 322 56.5
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.5e-89 331.6 322 56.5
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.5e-89 331.6 322 56.5
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.5e-89 331.6 322 56.5
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 7.2e-89 331.3 322 55.6
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 7.2e-89 331.3 326 56.7
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 7.2e-89 331.3 322 55.6
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 9.4e-89 330.9 326 55.8
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 9.4e-89 330.9 322 56.2
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 9.4e-89 330.9 322 55.6
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 2.1e-88 329.7 320 55.9
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 2.7e-88 329.3 322 55.6
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 2.7e-88 329.3 320 55.9
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 2.7e-88 329.3 322 55.9
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 2.7e-88 329.3 320 55.9
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 2.7e-88 329.3 326 56.1
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 3.6e-88 328.9 322 55.9
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 3.6e-88 328.9 322 55.9
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 4.7e-88 328.6 322 55.3
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 1.0e-87 327.4 327 55.0
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.0e-87 327.4 322 55.0
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 1.4e-87 327.0 322 54.7
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 2.3e-87 326.2 322 55.6
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 3.0e-87 325.9 327 54.7
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 4.0e-87 325.5 322 55.0
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 6.8e-87 324.7 322 55.6
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 2.0e-86 323.2 318 55.0
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 2.0e-86 323.2 320 54.4
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 5.7e-86 321.6 322 54.7
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 2.8e-85 319.3 322 54.3
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 6.3e-85 318.2 322 54.0
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 5.4e-84 315.1 306 56.5
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 5.4e-84 315.1 322 53.7
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 7.0e-84 314.7 322 54.3
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 9.1e-84 314.3 322 52.5
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 9.1e-84 314.3 322 54.3
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 9.1e-84 314.3 322 54.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.5e-83 312.0 322 54.0
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 4.5e-83 312.0 301 58.5
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 3.0e-79 299.3 322 50.6
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 1.2e-78 297.4 322 50.0
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 3.4e-78 295.8 327 50.2
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 4.1e-76 288.9 307 53.1
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 8.9e-71 271.2 265 54.7
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 2.4e-68 263.1 346 45.1
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 4.1e-68 262.3 322 45.3
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 4.6e-67 258.8 304 49.0
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.7e-64 248.8 235 57.0
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.4e-62 242.7 308 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 6.4e-61 238.4 180 67.2
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 1.0e-58 231.1 161 72.0
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 2.8e-56 223.0 161 71.4
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 1.3e-53 214.2 155 70.3
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 1.1e-52 211.1 262 48.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.4e-52 210.7 191 55.5
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 3.0e-50 203.0 262 44.7
BraA02t07513Z Brassica rapa HOM05D004107 ORTHO05D004738 1.9e-49 200.3 147 68.7
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 9.9e-46 188.0 257 44.0
BcaC03g16235 Brassica carinata HOM05D004107 ORTHO05D004738 2.5e-41 173.3 125 69.6
CSS0016174 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 7.6e-38 161.8 206 45.6
unitig_748.g7576 Utricularia gibba HOM05D004107 ORTHO05D004738 1.0e-34 151.4 179 48.0
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.3e-34 151.0 324 32.4
Pp3c4_7780 Physcomitrium patens HOM05D004107 ORTHO05D004738 7.3e-33 145.2 127 56.7
MD10G1319900 Malus domestica HOM05D004107 ORTHO05D004738 4.5e-30 136.0 175 45.1
CSS0046928 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.0e-26 124.8 175 41.1
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 1.4e-15 87.8 60 68.3
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 6.7e-10 68.9 39 84.6
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 4.1e-07 59.7 39 69.2


User provided reference genes

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