Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.1e-49 198.7 100 100.0
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.9e-31 139.0 73 95.9
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.1e-25 119.0 75 76.0
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 3.5e-25 118.2 73 79.5
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 4.6e-25 117.9 73 78.1
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 7.8e-25 117.1 73 78.1
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 7.8e-25 117.1 73 78.1
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 7.8e-25 117.1 73 78.1
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 7.8e-25 117.1 73 76.7
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.0e-24 116.7 72 77.8
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 1.0e-24 116.7 72 77.8
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.0e-24 116.7 73 76.7
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 1.3e-24 116.3 73 76.7
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.3e-24 116.3 73 74.0
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 1.3e-24 116.3 73 76.7
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 1.7e-24 115.9 72 76.4
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 75.3
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 1.7e-24 115.9 73 76.7
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.3e-24 115.5 72 77.8
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.3e-24 115.5 72 77.8
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 2.3e-24 115.5 72 77.8
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.3e-24 115.5 72 77.8
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 2.3e-24 115.5 72 77.8
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.3e-24 115.5 73 75.3
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 3.0e-24 115.2 73 76.7
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 3.0e-24 115.2 73 75.3
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 3.0e-24 115.2 74 74.3
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 3.9e-24 114.8 72 76.4
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 3.9e-24 114.8 72 76.4
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 3.9e-24 114.8 72 76.4
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.9e-24 114.8 73 75.3
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 3.9e-24 114.8 73 74.0
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 5.1e-24 114.4 73 74.0
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 5.1e-24 114.4 73 75.3
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 75.0
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 5.1e-24 114.4 72 76.4
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 75.3
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 6.6e-24 114.0 72 75.0
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 6.6e-24 114.0 73 72.6
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 6.6e-24 114.0 72 76.4
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 6.6e-24 114.0 72 75.0
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 6.6e-24 114.0 72 76.4
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 8.7e-24 113.6 72 75.0
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 8.7e-24 113.6 72 75.0
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 8.7e-24 113.6 72 75.0
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 1.1e-23 113.2 72 75.0
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 1.1e-23 113.2 72 75.0
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.1e-23 113.2 72 75.0
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 1.1e-23 113.2 73 72.6
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.5e-23 112.8 72 75.0
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 1.5e-23 112.8 73 72.6
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 1.9e-23 112.5 72 75.0
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 1.9e-23 112.5 73 74.0
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 1.9e-23 112.5 73 74.0
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 1.9e-23 112.5 73 74.0
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 1.9e-23 112.5 73 74.0
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 2.5e-23 112.1 73 72.6
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 2.5e-23 112.1 74 73.0
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 2.5e-23 112.1 71 74.6
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 5.6e-23 110.9 72 75.0
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 5.6e-23 110.9 73 72.6
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 5.6e-23 110.9 72 73.6
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 9.6e-23 110.2 73 69.9
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 2.8e-22 108.6 72 72.2
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 4.8e-22 107.8 73 68.5
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.8e-22 107.8 73 71.2
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.8e-22 107.8 73 71.2
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 6.2e-22 107.5 73 71.2
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.8e-21 105.9 73 67.1
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.8e-21 105.9 73 67.1
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 3.1e-21 105.1 73 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 4.0e-21 104.8 73 65.8
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 1.2e-20 103.2 73 68.5
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 1.2e-20 103.2 73 67.1
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.5e-20 102.8 74 71.6
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 2.0e-20 102.4 73 67.1
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 2.6e-20 102.1 73 67.1
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 2.6e-20 102.1 73 65.8
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 2.6e-20 102.1 73 65.8
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 5.8e-20 100.9 73 67.1
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 1.7e-19 99.4 68 72.1
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 2.9e-19 98.6 73 61.6
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 4.9e-19 97.8 73 65.8
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 6.4e-19 97.4 72 68.1
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 8.4e-19 97.1 69 66.7
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 1.9e-18 95.9 71 63.4
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 2.7e-17 92.0 72 62.5
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 1.0e-16 90.1 73 60.3
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 2.3e-16 89.0 57 77.2
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 2.3e-16 89.0 57 77.2
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 3.0e-16 88.6 73 58.9
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 1.9e-15 85.9 96 46.9
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 1.9e-15 85.9 71 56.3
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.9e-15 85.9 67 64.2
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 2.5e-15 85.5 55 70.9
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 2.5e-15 85.5 68 64.7
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 3.7e-14 81.6 71 54.9
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 3.1e-13 78.6 72 51.4
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.0e-13 78.2 72 54.2
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 6.9e-13 77.4 72 48.6
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 9.0e-13 77.0 72 45.8
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 2.6e-12 75.5 48 70.8
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 3.4e-12 75.1 75 53.3
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 7.6e-12 73.9 62 58.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-11 72.8 73 43.8
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 6.5e-11 70.9 50 64.0
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 3.9e-08 61.6 73 47.9
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 6.2e-06 54.3 34 76.5


User provided reference genes

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