Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 0.0e+00 1474.9 739 100.0
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 8.1e-252 874.0 714 67.4
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 3.5e-231 805.4 711 62.2
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 2.5e-216 756.1 710 56.8
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 2.0e-213 746.5 662 58.6
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 2.8e-212 742.7 715 57.3
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 6.3e-212 741.5 714 55.9
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 8.2e-212 741.1 711 56.0
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 1.4e-211 740.3 717 56.6
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 1.4e-211 740.3 711 56.0
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 3.1e-211 739.2 687 57.1
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.1e-208 730.7 702 56.1
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 7.2e-208 728.0 712 55.6
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 1.6e-207 726.9 714 56.6
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 2.3e-206 723.0 693 56.4
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 2.0e-205 719.9 710 55.5
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 6.3e-204 714.9 701 54.8
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 3.5e-202 709.1 707 55.4
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 1.3e-201 707.2 712 53.8
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 3.8e-201 705.7 662 57.7
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 1.9e-200 703.4 711 54.9
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 7.2e-200 701.4 713 53.4
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 1.6e-199 700.3 713 53.7
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.1e-199 699.9 712 53.2
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 3.6e-199 699.1 711 54.0
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 6.1e-199 698.4 695 54.2
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 3.0e-198 696.0 714 53.8
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 5.2e-198 695.3 711 52.0
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 8.8e-198 694.5 726 52.6
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.5e-197 693.7 662 55.7
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 5.7e-197 691.8 714 52.9
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 8.2e-196 688.0 704 53.1
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.1e-195 687.6 661 54.6
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 2.4e-195 686.4 690 53.6
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 2.4e-195 686.4 712 52.8
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 9.1e-195 684.5 659 54.0
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 2.0e-194 683.3 711 52.2
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 3.5e-194 682.6 627 56.5
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 4.5e-194 682.2 711 52.6
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 5.9e-194 681.8 712 52.9
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 1.3e-193 680.6 708 52.3
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.7e-193 680.2 710 52.3
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 2.9e-193 679.5 662 54.7
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 2.9e-193 679.5 711 52.3
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 8.5e-193 677.9 663 53.2
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.2e-191 674.1 712 52.1
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 2.7e-191 672.9 719 54.4
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.0e-190 669.5 702 52.7
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 1.2e-189 667.5 716 51.4
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 1.7e-188 663.7 729 51.3
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 6.3e-188 661.8 713 51.5
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 6.3e-188 661.8 711 51.6
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 2.7e-186 656.4 693 51.2
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 4.5e-186 655.6 708 50.7
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 3.2e-184 649.4 690 50.6
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 5.5e-184 648.7 690 50.0
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.2e-183 647.5 766 49.1
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 1.2e-183 647.5 696 50.6
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 2.1e-183 646.7 706 50.7
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 4.7e-183 645.6 693 50.6
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 2.3e-182 643.3 711 49.9
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 1.5e-181 640.6 690 49.6
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 2.0e-181 640.2 699 51.6
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 1.1e-179 634.4 691 48.9
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 1.8e-179 633.6 691 49.8
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 2.7e-178 629.8 690 49.0
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 4.5e-178 629.0 654 52.1
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 1.2e-175 620.9 691 48.9
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 1.2e-175 620.9 713 49.5
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 1.6e-175 620.5 691 48.9
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 2.3e-174 616.7 662 52.4
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 9.8e-173 611.3 676 49.4
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 3.5e-170 602.8 661 49.8
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 4.6e-170 602.4 662 49.5
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 1.3e-169 600.9 702 48.1
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 3.9e-169 599.4 662 52.0
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 3.3e-168 596.3 692 47.7
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 3.6e-167 592.8 704 47.4
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.1e-166 589.7 704 48.7
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.0e-165 587.0 713 48.8
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 5.8e-165 585.5 700 48.0
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 5.8e-165 585.5 722 48.5
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.3e-164 584.3 667 50.7
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.7e-164 583.9 708 45.8
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 8.3e-164 581.6 711 48.1
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 9.2e-163 578.2 608 52.0
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 1.6e-162 577.4 701 48.2
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 3.0e-161 573.2 692 46.8
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.6e-159 567.4 555 54.1
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 2.8e-159 566.6 585 55.9
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.4e-155 553.5 582 54.0
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 1.6e-154 550.8 329 78.4
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.3e-153 547.0 341 75.7
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.7e-145 520.8 579 52.0
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 3.0e-137 493.4 312 70.2
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 3.8e-132 476.5 279 83.2
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 3.3e-128 463.4 693 39.2
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-125 454.9 283 74.6
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 7.1e-123 445.7 295 70.8
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 1.2e-122 444.9 657 39.7
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 1.0e-121 441.8 289 72.0
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 5.6e-120 436.0 262 76.7
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 5.1e-113 412.9 718 35.5
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 7.2e-107 392.5 574 43.0
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.5e-104 384.0 316 60.1
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 1.2e-101 375.2 692 32.8
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 3.8e-100 370.2 431 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 6.7e-81 306.2 288 51.7
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 4.4e-80 303.5 517 39.1
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.6e-74 285.0 462 42.9
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 4.0e-65 253.8 293 41.6
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 8.6e-60 236.1 329 37.7
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 5.2e-57 226.9 415 37.1
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 5.2e-57 226.9 415 37.1
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 2.6e-56 224.6 154 64.3
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 1.3e-52 212.2 196 60.2
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 5.0e-52 210.3 333 36.0
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 4.3e-51 207.2 159 69.2
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 7.3e-51 206.5 198 60.1
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 4.7e-50 203.8 146 67.8
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-48 196.1 200 49.5
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 6.4e-47 193.4 126 67.5
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 7.8e-45 186.4 100 87.0
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.9e-43 181.8 150 70.7
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 1.4e-30 139.0 127 46.5
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.7e-28 132.1 80 77.5
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 1.2e-26 125.9 101 58.4
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 4.9e-23 114.0 74 70.3
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 9.6e-19 99.8 58 81.0
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 9.6e-19 99.8 66 68.2
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 3.1e-17 94.7 74 60.8
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 2.0e-16 92.0 55 70.9
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.3e-15 89.4 59 71.2
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 5.4e-14 84.0 45 82.2
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 3.5e-13 81.3 154 39.6
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 7.9e-13 80.1 154 39.0
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 6.7e-12 77.0 46 80.4
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 1.5e-11 75.9 131 41.2
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 2.5e-11 75.1 79 53.2
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 3.1e-09 68.2 72 48.6
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 3.4e-08 64.7 50 60.0
Medtr2g088350 Medicago truncatula HOM05D000088 ORTHO05D000830 2.9e-07 61.6 37 67.6
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 1.1e-06 59.7 74 54.1
BraA02t06891Z Brassica rapa HOM05D005198 ORTHO05D040308 4.2e-06 57.8 59 45.8


User provided reference genes

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