Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.9e-61 237.7 123 100.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.1e-32 142.5 79 93.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.7e-29 132.9 73 93.2
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 5.5e-28 127.9 71 94.4
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.7e-27 125.6 74 86.5
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.6e-27 124.8 74 86.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.0e-26 123.6 75 86.7
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.0e-26 123.6 71 90.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.3e-26 123.2 72 87.5
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.8e-26 122.9 74 85.1
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 2.3e-26 122.5 74 85.1
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.3e-26 122.5 72 87.5
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.0e-26 122.1 71 88.7
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.0e-26 122.1 71 88.7
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.9e-26 121.7 72 88.9
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.1e-25 120.2 74 83.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.9e-25 119.4 72 86.1
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.9e-25 119.4 74 79.7
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 2.5e-25 119.0 74 83.8
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 3.3e-25 118.6 74 85.1
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 3.3e-25 118.6 71 84.5
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 3.3e-25 118.6 73 86.3
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.3e-25 118.2 84 73.8
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 7.4e-25 117.5 70 85.7
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 9.7e-25 117.1 66 86.4
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.3e-24 116.7 82 76.8
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.3e-24 116.7 74 85.1
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.2e-24 115.9 77 80.5
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.2e-24 115.9 73 83.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.2e-24 115.9 74 81.1
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.8e-24 115.5 71 83.1
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.8e-24 115.5 71 83.1
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.7e-24 115.2 70 84.3
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.7e-24 115.2 70 84.3
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.7e-24 115.2 73 78.1
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 3.7e-24 115.2 72 81.9
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 4.8e-24 114.8 61 91.8
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 4.8e-24 114.8 61 91.8
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.8e-24 114.8 72 81.9
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 6.3e-24 114.4 83 74.7
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 8.2e-24 114.0 71 83.1
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.1e-23 113.6 70 80.0
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.1e-23 113.6 71 84.5
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.1e-23 113.6 71 83.1
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 1.4e-23 113.2 73 82.2
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.4e-23 113.2 75 80.0
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.8e-23 112.8 71 81.7
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-23 112.5 80 73.8
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-23 112.5 74 78.4
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 3.1e-23 112.1 71 81.7
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 4.1e-23 111.7 76 78.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.1e-23 111.7 71 78.9
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 5.3e-23 111.3 72 80.6
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 5.3e-23 111.3 72 77.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 5.3e-23 111.3 67 83.6
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 5.3e-23 111.3 71 81.7
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 6.9e-23 110.9 74 78.4
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 6.9e-23 110.9 72 80.6
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 6.9e-23 110.9 70 81.4
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 6.9e-23 110.9 69 81.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 9.0e-23 110.5 65 81.5
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.2e-22 110.2 66 83.3
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.2e-22 110.2 66 83.3
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.5e-22 109.8 70 80.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.5e-22 109.8 74 78.4
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.5e-22 109.8 71 78.9
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-22 109.8 74 78.4
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 1.5e-22 109.8 73 78.1
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.5e-22 109.8 64 82.8
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.0e-22 109.4 69 79.7
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 2.0e-22 109.4 71 78.9
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 2.0e-22 109.4 78 75.6
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.6e-22 109.0 60 86.7
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.6e-22 109.0 71 77.5
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.5e-22 108.2 69 78.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 4.5e-22 108.2 62 87.1
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 4.5e-22 108.2 64 81.2
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 5.9e-22 107.8 61 86.9
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.0e-21 107.1 59 86.4
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-21 106.7 74 77.0
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.7e-21 106.3 64 84.4
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.7e-21 106.3 64 84.4
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.7e-21 106.3 74 70.3
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.7e-21 106.3 64 79.7
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.9e-21 105.5 74 73.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.8e-21 105.1 68 79.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.8e-21 105.1 68 79.4
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.8e-21 105.1 60 83.3
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.8e-21 105.1 64 79.7
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 3.8e-21 105.1 70 77.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 5.0e-21 104.8 74 77.0
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 6.5e-21 104.4 74 73.0
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 6.5e-21 104.4 74 73.0
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 8.5e-21 104.0 61 85.2
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.4e-20 103.2 68 79.4
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.9e-20 102.8 61 85.2
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 2.5e-20 102.4 64 76.6
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.5e-20 102.4 65 83.1
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.5e-20 102.4 59 86.4
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.2e-20 102.1 74 71.6
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 3.2e-20 102.1 70 77.1
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 4.2e-20 101.7 68 76.5
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 4.2e-20 101.7 58 87.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 4.2e-20 101.7 58 87.9
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.2e-20 101.7 68 77.9
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 5.5e-20 101.3 58 87.9
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 5.5e-20 101.3 60 80.0
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 5.5e-20 101.3 65 75.4
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 5.5e-20 101.3 73 71.2
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 7.2e-20 100.9 67 77.6
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 7.2e-20 100.9 61 80.3
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 7.2e-20 100.9 58 84.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 7.2e-20 100.9 58 84.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 7.2e-20 100.9 58 84.5
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.3e-20 100.5 58 86.2
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.3e-20 100.5 58 86.2
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.3e-20 100.5 58 86.2
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.3e-20 100.5 58 86.2
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.3e-20 100.5 58 82.8
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.2e-19 100.1 58 86.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-19 99.8 71 76.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 2.1e-19 99.4 58 86.2
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.7e-19 99.0 55 89.1
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 4.6e-19 98.2 65 76.9
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 4.6e-19 98.2 58 82.8
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 4.6e-19 98.2 75 68.0
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.1e-19 97.8 58 82.8
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.0e-18 97.1 65 73.8
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.0e-18 95.5 58 81.0
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 3.0e-18 95.5 69 71.0
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.5e-17 93.2 67 74.6
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.5e-17 92.4 54 81.5
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.5e-17 92.4 57 78.9
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-15 87.0 71 64.8
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-15 87.0 71 64.8
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.1e-15 85.5 60 73.3
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 5.3e-15 84.7 56 76.8
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.2e-14 83.6 55 72.7
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.0e-14 82.8 69 63.8
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 2.6e-14 82.4 64 64.1
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 4.5e-14 81.6 68 63.2
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.3e-13 80.1 63 65.1
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.2e-13 79.3 64 59.4
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.2e-13 79.3 50 76.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.9e-13 79.0 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.9e-13 79.0 56 71.4
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 2.9e-13 79.0 40 95.0
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 3.8e-13 78.6 58 63.8
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 3.8e-13 78.6 46 82.6
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.1e-12 77.0 65 58.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.1e-12 77.0 70 51.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 3.2e-12 75.5 64 57.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 3.2e-12 75.5 51 74.5
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 9.4e-12 73.9 56 69.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 2.6e-09 65.9 34 91.2
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.7e-08 63.2 66 50.0
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 7.0e-07 57.8 35 82.9
Gohir.A12G267900 Gossypium hirsutum HOM05D004624 ORTHO05D005357 5.9e-06 54.7 26 100.0


User provided reference genes

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