Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 5.0e-288 993.8 528 100.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.8e-203 711.8 507 78.5
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.8e-192 676.4 507 74.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.8e-192 674.1 507 75.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.8e-189 666.4 507 73.0
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.6e-188 663.3 506 71.9
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.6e-185 652.1 507 72.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.2e-182 642.9 507 69.8
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.4e-181 639.4 507 70.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 7.0e-181 637.9 508 70.5
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.2e-179 632.9 507 69.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.5e-178 629.4 507 69.0
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 7.2e-178 627.9 504 68.8
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.6e-177 625.5 507 69.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.6e-177 625.5 507 69.4
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 4.7e-177 625.2 507 69.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.0e-177 624.4 507 69.2
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 8.0e-177 624.4 507 68.4
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.4e-176 623.6 507 69.2
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.8e-176 623.2 507 68.8
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.3e-176 622.9 507 68.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.0e-176 622.5 507 68.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.0e-176 622.1 507 69.2
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.0e-176 622.1 507 69.0
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 5.2e-176 621.7 507 68.6
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 8.8e-176 620.9 507 68.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 8.8e-176 620.9 507 68.8
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.2e-175 620.5 507 68.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.2e-175 620.5 506 69.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.5e-175 620.2 510 69.2
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.0e-175 619.8 507 69.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.0e-175 619.8 507 67.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 4.4e-175 618.6 507 68.4
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.5e-175 617.8 507 68.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 7.5e-175 617.8 507 67.9
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-174 617.1 507 67.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.7e-174 616.7 507 67.7
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.7e-174 616.7 507 68.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.2e-174 616.3 507 67.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 2.2e-174 616.3 509 67.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.2e-174 616.3 507 67.5
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.8e-174 615.9 507 67.7
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.8e-174 615.1 507 67.9
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.3e-174 614.8 507 67.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 6.3e-174 614.8 507 67.5
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 6.3e-174 614.8 507 67.3
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 8.3e-174 614.4 507 68.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 8.3e-174 614.4 507 67.7
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.4e-173 613.6 507 67.3
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.8e-173 613.2 507 66.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.1e-173 612.1 507 68.8
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.1e-173 612.1 507 67.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.4e-173 611.7 507 68.2
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 7.0e-173 611.3 507 67.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.0e-173 611.3 507 66.9
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 9.1e-173 610.9 507 67.3
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 9.1e-173 610.9 507 68.0
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.0e-172 609.8 507 66.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.7e-172 609.4 507 67.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.7e-172 607.8 507 67.1
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.3e-171 607.1 507 66.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.3e-171 607.1 507 67.7
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.7e-171 606.7 507 67.7
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.3e-171 606.3 507 67.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.3e-171 606.3 507 67.1
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.3e-171 606.3 507 66.9
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.9e-171 605.9 508 67.9
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.1e-170 604.0 506 67.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-170 603.6 507 66.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.9e-170 603.2 506 67.2
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 7.2e-170 601.3 509 66.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 9.5e-170 600.9 507 66.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 9.5e-170 600.9 507 66.3
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.6e-169 599.0 507 65.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 6.1e-169 598.2 507 65.5
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.4e-168 597.0 508 66.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.2e-168 595.1 505 66.7
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 6.8e-168 594.7 508 65.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-167 594.0 508 65.7
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-167 593.6 508 65.7
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 2.0e-167 593.2 508 65.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.0e-167 593.2 507 65.1
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 3.4e-167 592.4 508 64.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 3.4e-167 592.4 508 65.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 9.8e-167 590.9 508 65.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 3.7e-166 589.0 508 64.8
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 3.7e-166 589.0 508 64.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.7e-166 589.0 508 64.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 3.7e-166 589.0 507 65.9
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.3e-166 588.2 505 66.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-165 587.4 508 65.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.1e-165 587.4 508 64.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.4e-165 587.0 507 65.3
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 3.1e-165 585.9 507 64.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 3.1e-165 585.9 508 65.0
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.1e-165 585.9 507 65.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.1e-165 585.5 505 65.5
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.1e-165 585.5 507 64.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.1e-165 585.5 507 63.9
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.7e-164 582.8 508 64.2
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.7e-164 582.8 508 64.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.5e-164 582.0 507 64.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.0e-163 580.9 507 65.1
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.7e-163 580.1 507 64.1
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 8.6e-163 577.8 512 65.0
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.5e-162 576.2 507 64.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.5e-162 576.2 612 56.4
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.3e-162 575.9 512 63.5
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 5.6e-162 575.1 512 63.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.8e-161 572.8 483 67.9
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-160 570.1 508 64.2
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-159 567.4 507 62.9
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 4.1e-157 558.9 607 56.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.9e-150 536.2 505 60.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.6e-148 530.4 507 61.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 6.0e-148 528.5 510 60.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.6e-145 519.2 506 59.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.3e-144 516.5 507 59.0
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.5e-143 513.8 507 59.2
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.5e-140 502.7 506 57.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 4.6e-140 502.3 507 57.8
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 8.6e-139 498.0 472 61.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.1e-138 497.7 452 64.2
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.1e-138 497.7 505 57.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 6.4e-134 481.9 445 61.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.2e-127 461.1 421 63.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.2e-126 456.8 507 54.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.3e-114 416.4 382 63.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 9.0e-112 408.3 506 50.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-99 366.7 235 84.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.3e-89 334.7 502 48.8
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 8.2e-89 332.0 502 41.4
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.6e-84 316.6 294 63.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.3e-72 276.2 210 69.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.6e-68 263.5 160 88.1
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.0e-68 262.3 160 86.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 4.2e-61 240.0 503 36.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.4e-51 208.4 130 83.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.4e-51 208.4 536 33.2
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.3e-37 160.2 154 50.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 9.5e-37 159.1 145 54.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-29 135.6 87 81.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 7.3e-29 132.9 160 45.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 4.9e-25 120.2 125 57.6
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.4e-25 119.8 216 41.2
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.5e-21 107.8 186 38.7
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.7e-17 95.1 85 63.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.0e-11 72.8 50 76.0
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.0e-11 72.8 65 64.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.9e-08 65.1 71 54.9
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 2.4e-08 64.7 70 55.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.4e-08 64.7 57 54.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.2e-07 62.4 71 53.5
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 3.0e-06 57.8 117 35.9
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.9e-06 57.4 57 43.9


User provided reference genes

Program Settings