Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 3.7e-166 588.2 312 100.0
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.7e-113 413.3 315 73.3
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 7.0e-104 381.3 326 65.0
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.0e-102 377.5 324 63.6
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 6.5e-102 374.8 326 62.3
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 5.2e-99 365.2 323 62.2
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.8e-88 330.1 331 57.4
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 2.2e-86 323.2 315 54.9
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 4.2e-85 318.9 318 54.7
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 2.1e-84 316.6 314 54.1
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 2.8e-84 316.2 332 54.8
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 3.6e-84 315.8 312 55.1
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 2.3e-83 313.2 300 58.3
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.0e-82 310.1 315 54.3
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 5.7e-82 308.5 318 53.8
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.8e-80 303.5 328 53.4
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 4.1e-80 302.4 317 54.3
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 4.1e-80 302.4 329 53.5
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 5.4e-80 302.0 332 54.2
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 5.4e-80 302.0 315 52.4
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 7.0e-80 301.6 315 52.4
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 9.2e-80 301.2 324 53.1
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 1.2e-79 300.8 313 57.2
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.5e-79 299.3 342 51.8
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 7.8e-79 298.1 318 51.9
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.0e-78 297.7 315 53.0
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.3e-78 297.4 315 53.3
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.3e-78 297.4 299 52.8
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.7e-78 297.0 322 52.8
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 2.9e-78 296.2 320 51.9
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 3.8e-78 295.8 315 51.4
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 5.0e-78 295.4 315 53.0
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 6.6e-78 295.0 320 55.3
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.1e-77 294.3 315 52.1
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.5e-77 293.9 317 52.1
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.6e-76 290.4 333 52.6
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 3.6e-76 289.3 318 51.3
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 6.1e-76 288.5 322 51.9
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 8.0e-76 288.1 316 51.6
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 8.0e-76 288.1 307 52.8
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 1.8e-75 287.0 319 51.4
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.3e-75 286.6 322 51.6
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 6.8e-75 285.0 321 52.0
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 2.0e-74 283.5 318 52.2
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 2.0e-74 283.5 317 52.7
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 2.0e-74 283.5 316 50.9
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.6e-74 283.1 308 51.9
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 3.4e-74 282.7 331 51.1
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 3.4e-74 282.7 319 52.0
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 4.4e-74 282.3 314 50.3
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 5.7e-74 282.0 317 51.4
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 5.7e-74 282.0 314 50.3
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 1.3e-73 280.8 318 51.6
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.7e-73 280.4 322 51.6
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 3.7e-73 279.3 325 50.5
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 6.4e-73 278.5 321 50.5
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 3.2e-72 276.2 304 50.7
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 7.0e-72 275.0 326 50.9
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 1.2e-71 274.2 320 47.8
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.2e-71 274.2 321 48.0
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 2.7e-71 273.1 321 49.5
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 3.5e-71 272.7 316 50.9
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 7.8e-71 271.6 314 50.3
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 2.3e-70 270.0 320 49.4
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 3.0e-70 269.6 319 50.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 3.9e-70 269.2 324 51.2
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 3.9e-70 269.2 320 51.6
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.5e-69 267.3 321 51.4
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 1.5e-69 267.3 338 47.3
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 3.3e-69 266.2 316 50.6
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 4.3e-69 265.8 302 49.3
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 7.3e-69 265.0 321 47.0
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 9.5e-69 264.6 315 50.5
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 2.8e-68 263.1 316 49.4
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 3.6e-68 262.7 314 48.4
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 4.7e-68 262.3 314 48.4
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 4.0e-67 259.2 333 48.0
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 2.0e-66 256.9 317 47.3
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.4e-66 256.1 317 48.6
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.3e-65 254.2 316 47.8
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.3e-65 254.2 316 47.5
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 3.7e-65 252.7 328 47.9
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 6.4e-65 251.9 306 49.0
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.4e-64 250.8 298 50.7
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 7.0e-64 248.4 317 47.9
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 3.0e-62 243.0 320 47.5
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 7.3e-61 238.4 316 46.5
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.3e-61 238.4 316 46.5
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 7.3e-61 238.4 318 47.8
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 6.2e-60 235.3 200 62.5
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.4e-59 234.2 316 46.2
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.4e-59 234.2 316 46.2
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 2.3e-59 233.4 322 46.0
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 7.5e-58 228.4 325 46.2
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 2.9e-57 226.5 276 49.3
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.0e-54 218.0 305 41.3
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 6.6e-54 215.3 301 45.2
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 8.6e-54 214.9 307 46.3
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 2.8e-52 209.9 312 41.7
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.4e-50 203.0 180 58.3
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 2.7e-47 193.4 177 58.2
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 7.8e-47 191.8 250 47.6
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.4e-42 176.4 396 34.3
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 8.1e-36 155.2 297 38.7
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 1.4e-35 154.5 309 35.0
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 2.4e-35 153.7 346 32.9
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 7.1e-32 142.1 307 34.2
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 5.1e-30 136.0 181 44.2
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 2.1e-28 130.6 140 52.1
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 3.7e-28 129.8 167 47.9
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.4e-27 127.9 306 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 2.4e-27 127.1 390 26.7
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 1.1e-21 108.2 189 36.0
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 6.9e-19 99.0 82 56.1
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 1.4e-16 91.3 72 65.3
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 6.7e-14 82.4 208 34.1
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 7.4e-13 79.0 101 47.5
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 4.5e-10 69.7 78 46.2
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 1.7e-09 67.8 86 48.8
VMungo0647G0753 Vigna mungo HOM05D006207 ORTHO05D007868 6.1e-07 59.3 140 34.3
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 3.9e-06 56.6 64 45.3


User provided reference genes

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