Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 3.8e-124 448.4 259 100.0
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.0e-52 211.1 263 61.2
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.0e-52 211.1 263 61.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.8e-50 203.0 258 54.7
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.5e-48 197.2 260 55.8
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.2e-46 189.5 260 54.2
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-44 184.5 258 43.8
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.8e-44 183.7 259 54.1
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 6.7e-44 181.8 258 43.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 6.7e-44 181.8 259 51.4
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.5e-43 180.6 260 42.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.5e-43 180.6 260 42.7
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 5.7e-43 178.7 259 50.6
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 4.8e-42 175.6 254 49.2
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-41 172.9 229 43.2
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 7.0e-41 171.8 256 48.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.2e-40 171.0 260 51.5
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.5e-40 170.6 257 51.8
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.5e-40 170.6 257 51.8
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 3.5e-40 169.5 257 49.4
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 4.5e-40 169.1 256 49.2
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 4.5e-40 169.1 260 44.6
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.0e-39 167.9 254 49.6
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.0e-39 167.9 256 48.4
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.3e-39 167.5 257 49.4
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.7e-39 167.2 257 46.3
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.2e-39 166.8 257 45.9
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.1e-38 164.5 256 48.4
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 2.5e-38 163.3 258 48.1
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.5e-38 163.3 256 49.2
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 4.2e-38 162.5 256 54.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 4.2e-38 162.5 262 47.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 5.5e-38 162.2 258 49.2
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 5.5e-38 162.2 256 47.7
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.1e-37 160.2 258 48.8
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 2.3e-36 156.8 256 48.0
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 3.9e-36 156.0 266 46.2
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.5e-35 154.1 261 46.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.6e-35 153.3 258 45.3
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 2.6e-35 153.3 258 48.1
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.3e-35 152.9 256 48.4
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.4e-35 152.5 266 46.6
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 7.4e-35 151.8 243 45.7
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 7.4e-35 151.8 258 43.0
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.7e-34 150.6 259 46.7
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.7e-34 150.6 265 45.7
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.2e-34 150.2 261 44.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.2e-34 150.2 263 47.1
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.8e-34 149.8 261 44.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.8e-34 149.8 253 46.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 4.8e-34 149.1 255 46.7
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.8e-34 149.1 255 45.9
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 4.8e-34 149.1 230 48.7
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 8.2e-34 148.3 256 44.5
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.4e-33 147.5 255 46.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.4e-33 146.7 258 47.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 3.1e-33 146.4 259 45.9
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.0e-32 143.7 250 46.0
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.6e-32 143.3 256 43.8
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.6e-32 143.3 259 45.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 2.6e-32 143.3 259 45.6
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.5e-32 142.9 254 45.3
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.5e-32 142.9 254 45.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-32 142.5 259 45.2
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 5.9e-32 142.1 236 48.3
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 5.9e-32 142.1 145 67.6
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 7.7e-32 141.7 205 53.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.7e-32 141.7 258 45.3
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 7.7e-32 141.7 258 45.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.0e-31 141.4 235 47.2
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.0e-31 141.4 253 45.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 1.0e-31 141.4 266 44.4
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-31 140.6 148 45.9
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.7e-31 140.6 259 45.2
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.2e-31 140.2 256 44.9
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.2e-31 140.2 258 44.6
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.9e-31 139.8 236 43.6
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-31 139.0 257 42.8
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 5.0e-31 139.0 255 43.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 5.0e-31 139.0 255 43.9
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 8.5e-31 138.3 254 42.1
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 8.5e-31 138.3 230 47.4
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.5e-31 138.3 230 47.4
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 8.5e-31 138.3 257 43.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.1e-30 137.9 257 46.7
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.1e-30 137.9 258 45.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.5e-30 137.5 255 43.5
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.9e-30 137.1 258 40.7
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.9e-30 137.1 256 43.8
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.9e-30 137.1 223 47.5
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.5e-30 135.6 254 43.7
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 5.5e-30 135.6 255 48.2
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.2e-29 134.4 228 46.5
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 2.1e-29 133.7 256 44.5
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 2.7e-29 133.3 259 44.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.7e-29 133.3 254 36.2
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 6.1e-29 132.1 180 45.0
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 8.0e-29 131.7 259 43.6
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.0e-28 131.3 259 42.5
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.4e-28 131.0 255 43.5
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 4.0e-28 129.4 258 40.3
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 6.8e-28 128.6 258 41.1
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 8.8e-28 128.3 258 35.7
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 8.8e-28 128.3 263 41.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.2e-27 127.9 265 34.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.2e-27 127.9 263 40.3
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.5e-27 127.5 256 41.4
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.6e-27 126.7 254 41.7
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 2.6e-27 126.7 239 45.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.4e-27 125.9 255 43.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 4.4e-27 125.9 235 46.0
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.8e-26 123.2 140 62.9
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.8e-26 122.5 263 41.1
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-25 120.6 148 39.9
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-25 120.6 148 39.9
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.4e-25 120.2 141 58.9
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-24 117.1 148 39.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-24 117.1 148 39.2
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-24 117.1 140 48.6
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.0e-24 117.1 220 33.6
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.5e-23 111.7 255 43.9
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.1e-22 111.3 140 57.9
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 7.2e-22 108.6 256 38.3
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.6e-21 107.5 138 42.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 4.7e-21 105.9 143 49.7
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 4.7e-21 105.9 143 49.7
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 4.7e-21 105.9 143 49.7
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 4.7e-21 105.9 143 49.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-20 104.4 143 57.3
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.8e-20 104.0 141 50.4
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.0e-20 103.2 179 35.2
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.8e-20 101.7 148 54.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.5e-19 100.9 143 56.6
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.8e-18 96.7 168 35.1
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 3.7e-18 96.3 121 45.5
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 6.3e-18 95.5 136 55.9
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 5.4e-17 92.4 143 46.2
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 5.4e-17 92.4 143 46.2
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 5.9e-16 89.0 178 41.6
Atru.chr6.1495 Acer truncatum HOM05D005036 ORTHO05D005881 5.5e-14 82.4 54 74.1
Atru.chr4.2604 Acer truncatum HOM05D005036 ORTHO05D005881 2.8e-13 80.1 63 65.1
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.8e-13 80.1 118 39.8
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.0e-12 78.2 45 73.3
ATR0329G069 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.5e-11 74.3 144 32.6
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 1.5e-11 74.3 113 37.2
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.6e-11 73.6 143 30.8
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 8.3e-10 68.6 129 47.3
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 7.8e-08 62.0 161 29.8
THA.LOC104816358 Tarenaya hassleriana HOM05D000255 ORTHO05D001008 2.3e-07 60.5 43 67.4
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 2.9e-07 60.1 66 56.1
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.5e-06 57.8 204 28.9
AagrBONN_evm.TU.Sc2ySwM_362.115 Anthoceros agrestis HOM05D014365 ORTHO05D013713 3.3e-06 56.6 127 29.9


User provided reference genes

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