Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 5.3e-265 917.1 471 100.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 7.8e-208 727.2 462 83.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 2.4e-204 715.7 489 78.7
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 9.6e-198 693.7 457 80.5
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.3e-191 673.3 464 76.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.5e-190 669.1 490 75.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.5e-190 669.1 461 77.9
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 6.2e-189 664.5 466 74.7
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 6.2e-189 664.5 490 74.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 6.2e-189 664.5 468 77.1
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.5e-187 659.8 464 73.7
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 3.4e-187 658.7 489 73.2
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 9.9e-187 657.1 476 72.7
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.4e-185 653.3 458 75.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 2.4e-185 652.5 457 75.5
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.6e-184 649.8 464 75.6
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 2.7e-184 649.0 489 72.4
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 4.6e-184 648.3 476 72.9
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 7.9e-184 647.5 457 75.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.0e-183 645.6 486 72.2
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.9e-183 645.2 468 73.9
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 8.7e-183 644.0 464 75.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 4.3e-182 641.7 485 72.2
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.6e-182 641.3 456 75.4
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 7.4e-182 641.0 476 73.7
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 7.4e-182 641.0 489 71.6
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 9.6e-182 640.6 458 73.8
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-181 640.2 447 75.2
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.1e-180 637.1 440 77.3
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.1e-180 637.1 489 71.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.4e-180 636.0 502 69.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 6.9e-180 634.4 465 73.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 9.0e-180 634.0 456 74.6
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.2e-179 633.6 489 69.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.5e-179 633.3 465 72.5
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.0e-179 632.9 489 69.7
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 2.0e-179 632.9 474 71.3
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.6e-179 632.5 475 70.5
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 4.5e-179 631.7 447 74.0
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 4.5e-179 631.7 511 68.5
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.8e-179 631.3 488 69.9
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 9.9e-179 630.6 457 73.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 9.9e-179 630.6 456 74.1
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 9.9e-179 630.6 490 70.2
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.3e-178 630.2 489 69.1
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.7e-178 629.8 462 72.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 2.2e-178 629.4 458 71.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 2.9e-178 629.0 495 69.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.9e-178 629.0 457 73.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.9e-178 628.2 472 71.2
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 6.4e-178 627.9 438 75.3
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.1e-177 627.1 457 73.5
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.2e-177 625.5 461 72.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.2e-177 625.5 464 73.3
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.2e-177 625.5 464 73.5
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.5e-177 624.8 455 73.0
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.5e-177 624.8 457 73.1
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.2e-176 623.6 464 72.8
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.6e-176 623.2 470 72.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 2.1e-176 622.9 461 72.7
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 3.5e-176 622.1 501 68.1
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.9e-176 620.9 455 72.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.0e-175 620.5 458 71.6
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.3e-175 620.2 435 77.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.8e-175 619.8 461 71.8
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.8e-175 619.8 491 69.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 2.3e-175 619.4 491 68.0
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.0e-175 619.0 457 72.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.1e-174 617.1 475 70.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 4.3e-174 615.1 491 67.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 8.2e-173 610.9 461 71.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.2e-173 610.9 422 78.4
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.2e-173 610.9 457 71.6
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.8e-172 609.8 465 71.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 6.9e-172 607.8 461 70.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.6e-171 605.9 461 70.3
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.6e-171 605.9 461 70.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.4e-171 605.5 461 70.3
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 3.4e-171 605.5 461 70.1
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.5e-171 605.1 461 70.3
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 4.5e-171 605.1 461 70.5
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.5e-171 605.1 478 68.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.5e-171 605.1 561 62.0
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-170 603.6 461 70.1
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 6.5e-170 601.3 461 70.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.1e-169 600.5 463 70.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.4e-169 600.1 461 70.1
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 3.2e-169 599.0 461 70.5
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.5e-168 595.5 461 69.8
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 6.0e-168 594.7 461 69.8
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 7.4e-166 587.8 487 66.1
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 4.2e-161 572.0 412 74.5
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.2e-161 571.2 427 73.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 3.9e-159 565.5 457 67.0
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.1e-159 565.1 449 68.2
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 3.7e-157 558.9 419 71.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.3e-156 555.1 439 70.4
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.2e-153 545.8 435 65.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.0e-151 539.3 422 71.1
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 4.4e-150 535.4 410 71.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 9.1e-148 527.7 437 64.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.1e-148 527.7 430 68.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-147 527.3 402 72.9
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.5e-142 510.4 497 62.6
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 3.3e-142 509.2 436 62.8
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.1e-140 504.2 399 66.7
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 2.1e-136 490.0 364 75.5
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.4e-119 434.1 437 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 6.8e-119 431.8 373 63.3
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.7e-115 419.9 415 59.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 9.5e-113 411.4 448 53.3
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 2.3e-111 406.8 329 64.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 7.5e-110 401.7 312 70.8
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.1e-105 387.9 445 50.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 9.5e-105 384.8 383 59.0
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.0e-100 368.6 266 76.7
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 6.8e-95 352.1 223 83.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-92 344.7 195 91.3
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.4e-85 318.5 195 84.1
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.9e-82 309.7 197 82.2
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.8e-79 300.8 260 67.7
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 9.9e-70 268.5 211 65.4
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 8.7e-58 228.8 147 76.2
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.8e-55 221.1 190 68.9
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.6e-46 190.7 124 75.0
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.9e-45 187.2 466 32.6
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.1e-35 152.9 134 59.0
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.8e-31 141.4 102 74.5
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.3e-29 135.2 256 38.3
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.9e-29 134.0 98 68.4
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.9e-29 134.0 98 68.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.1e-28 132.1 101 71.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.1e-28 132.1 158 53.2
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.5e-28 131.0 238 38.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.1e-25 122.1 79 77.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.3e-24 118.6 294 34.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.9e-20 104.8 80 67.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-16 91.7 46 84.8
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-16 91.7 46 84.8
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-15 87.4 104 50.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 4.1e-15 87.0 106 49.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 7.0e-15 86.3 106 49.1
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 9.1e-15 85.9 104 49.0
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 9.1e-15 85.9 104 49.0
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 9.1e-15 85.9 102 50.0
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 9.1e-15 85.9 104 49.0
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 9.1e-15 85.9 71 59.2
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 9.1e-15 85.9 71 59.2
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-14 85.5 104 49.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-14 85.5 82 56.1
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-14 85.5 104 49.0
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.0e-14 84.7 104 48.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 3.5e-14 84.0 61 60.7
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.3e-13 82.0 91 56.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.2e-13 81.3 117 47.0
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-12 79.0 80 56.2
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.9e-12 78.2 106 47.2
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.9e-12 78.2 160 38.1
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.5e-12 77.8 57 70.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 2.5e-12 77.8 64 64.1
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-11 75.1 169 34.3
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 5.2e-10 70.1 89 48.3
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.2e-08 64.7 67 50.7
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 3.7e-08 63.9 77 48.1
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 8.3e-08 62.8 59 54.2
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.2e-06 58.9 45 64.4
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.2e-06 58.9 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.5e-06 57.0 60 56.7


User provided reference genes

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