Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.5e-71 272.7 136 100.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.0e-59 233.4 137 86.9
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.5e-55 219.5 131 84.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 9.9e-55 216.9 132 84.1
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.3e-49 199.9 132 77.3
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 5.8e-47 191.0 123 77.2
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.9e-45 186.0 122 74.6
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 6.0e-44 181.0 134 67.9
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.0e-43 180.3 124 73.4
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.9e-43 178.3 125 72.0
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.7e-43 177.6 125 71.2
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.7e-43 177.6 125 71.2
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.7e-43 177.6 125 71.2
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 8.7e-43 177.2 119 73.9
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-42 176.8 125 71.2
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-42 176.8 125 71.2
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-42 176.0 125 70.4
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.5e-42 175.6 125 71.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.5e-42 175.6 125 70.4
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 2.5e-42 175.6 124 72.6
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 3.3e-42 175.3 126 72.2
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-42 174.5 125 70.4
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.8e-41 172.2 119 71.4
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.7e-41 171.8 112 74.1
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 4.8e-41 171.4 130 63.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.1e-41 170.6 132 67.4
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 8.1e-41 170.6 122 69.7
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 2.4e-40 169.1 137 62.0
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.4e-40 169.1 124 65.3
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 3.1e-40 168.7 117 70.9
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 4.0e-40 168.3 123 67.5
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 5.3e-40 167.9 134 65.7
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 6.9e-40 167.5 115 70.4
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 9.0e-40 167.2 122 65.6
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-39 166.4 125 68.8
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-39 166.4 125 68.0
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.0e-39 166.0 125 68.0
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 7.6e-39 164.1 109 71.6
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 9.9e-39 163.7 130 63.1
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 9.9e-39 163.7 126 63.5
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.9e-39 163.7 125 67.2
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 9.9e-39 163.7 130 61.5
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.7e-38 162.9 133 60.9
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.7e-38 162.9 115 66.1
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.2e-38 162.5 129 62.8
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.2e-38 162.5 137 59.9
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.2e-38 162.5 129 61.2
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.2e-38 162.5 137 62.0
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.9e-38 162.2 121 69.4
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.1e-37 160.2 141 62.4
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.1e-37 160.2 125 63.2
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.4e-37 159.8 142 61.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.4e-37 159.8 118 62.7
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-37 159.5 101 76.2
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.9e-37 159.5 142 61.3
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.4e-37 159.1 121 63.6
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 4.2e-37 158.3 129 61.2
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 5.5e-37 157.9 120 65.0
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.5e-37 157.9 135 63.0
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 7.1e-37 157.5 125 63.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 7.1e-37 157.5 127 61.4
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.7e-36 155.6 127 62.2
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 6.0e-36 154.5 111 66.7
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 7.9e-36 154.1 166 51.2
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.3e-35 153.3 125 61.6
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.3e-35 153.3 127 60.6
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 5.1e-35 151.4 123 59.3
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 8.7e-35 150.6 111 66.7
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 5.6e-34 147.9 126 59.5
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.3e-33 146.7 118 58.5
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.2e-31 140.2 146 52.7
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.2e-31 140.2 146 52.7
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.2e-31 140.2 133 56.4
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 7.6e-31 137.5 123 59.3
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.7e-30 136.3 146 50.7
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 2.2e-30 136.0 125 58.4
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.5e-29 132.5 125 56.0
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 7.1e-29 131.0 113 60.2
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 9.3e-29 130.6 123 53.7
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.6e-28 129.8 223 38.6
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.1e-28 129.4 100 65.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 4.6e-28 128.3 130 56.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.1e-27 124.8 92 68.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 2.5e-26 122.5 132 50.8
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 7.4e-26 120.9 120 55.0
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 7.4e-26 120.9 118 54.2
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 9.7e-26 120.6 112 54.5
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 2.2e-25 119.4 120 52.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-24 117.1 92 67.4
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 3.1e-24 115.5 116 54.3
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 5.3e-24 114.8 105 59.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.2e-23 113.6 116 52.6
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.5e-23 113.2 93 59.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 2.6e-23 112.5 110 52.7
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.6e-23 112.5 117 50.4
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 2.6e-23 112.5 120 55.8
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 3.4e-23 112.1 117 51.3
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 4.5e-23 111.7 125 52.8
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 7.6e-23 110.9 115 50.4
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 7.6e-23 110.9 95 61.1
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.9e-22 109.0 124 49.2
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.1e-21 107.1 115 49.6
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.5e-21 105.9 124 48.4
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 3.2e-21 105.5 110 47.3
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 3.2e-21 105.5 112 49.1
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 5.5e-21 104.8 116 44.8
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.2e-20 103.6 115 47.0
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 3.6e-20 102.1 117 48.7
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.6e-20 102.1 117 46.2
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 3.6e-20 102.1 125 46.4
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 7.9e-20 100.9 77 67.5
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.4e-19 100.1 79 60.8
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 5.1e-19 98.2 115 47.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 6.7e-19 97.8 115 46.1
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 6.7e-19 97.8 83 55.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.1e-18 97.1 116 47.4
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.5e-18 95.9 62 74.2
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 9.7e-18 94.0 101 50.5
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.7e-17 93.2 100 48.0
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 8.2e-17 90.9 116 43.1
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.5e-15 86.7 77 54.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.5e-15 86.7 84 50.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.6e-15 85.9 62 59.7
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.3e-14 83.6 124 38.7
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.4e-13 80.1 112 41.1
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.1e-12 76.3 89 47.2
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.1e-12 74.7 111 36.9
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 3.9e-11 72.0 54 63.0
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.7e-11 71.2 55 58.2
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.8e-11 70.9 55 58.2
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.8e-09 65.9 61 50.8
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 8.2e-09 64.3 49 57.1
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 1.5e-07 60.1 46 60.9
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 3.4e-07 58.9 80 37.5
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 4.5e-07 58.5 80 37.5
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 4.5e-07 58.5 56 60.7
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.9e-06 55.8 48 52.1
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 6.5e-06 54.7 45 60.0


User provided reference genes

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