Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.1e-181 637.9 311 100.0
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 7.0e-165 583.9 334 86.2
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.1e-155 551.2 335 82.1
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.4e-152 542.3 335 81.2
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.8e-150 535.0 332 79.5
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.8e-150 535.0 332 79.5
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.1e-148 529.3 331 79.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.1e-144 515.4 333 75.1
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.0e-143 512.7 327 78.0
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.4e-141 505.8 330 75.2
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.6e-140 503.1 333 73.9
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 2.1e-140 502.7 329 75.4
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.7e-140 502.3 333 73.0
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.0e-139 498.8 333 73.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.1e-138 496.9 328 75.0
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.5e-138 496.5 330 74.2
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.6e-138 494.6 329 74.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 7.3e-138 494.2 330 73.6
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.6e-137 493.0 332 70.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.1e-137 492.7 331 72.5
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.4e-136 490.0 333 71.8
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 2.4e-136 489.2 327 74.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 6.9e-136 487.6 330 72.7
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 9.0e-136 487.3 330 73.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-135 486.9 329 72.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.2e-135 486.9 327 71.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.5e-135 486.5 330 72.4
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.0e-135 486.1 329 72.0
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.0e-135 486.1 330 73.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 4.5e-135 485.0 330 72.7
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 4.5e-135 485.0 328 72.3
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 9.9e-135 483.8 330 72.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-134 483.4 329 71.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.2e-134 482.6 329 71.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.9e-134 482.3 328 72.3
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 3.8e-134 481.9 330 71.2
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.1e-133 480.3 329 71.4
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.4e-133 479.9 327 72.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.2e-133 478.8 333 70.6
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.5e-132 475.3 332 69.9
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.5e-132 475.3 328 70.1
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 6.0e-132 474.6 328 70.1
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 7.9e-132 474.2 330 70.6
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.0e-131 472.2 328 72.0
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 3.0e-131 472.2 331 69.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 3.9e-131 471.9 332 69.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 5.1e-131 471.5 327 69.7
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.7e-131 470.7 327 70.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.5e-130 469.9 328 70.1
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 2.5e-130 469.2 332 69.0
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 9.6e-130 467.2 328 69.5
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.1e-129 466.1 329 67.8
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.1e-129 466.1 328 70.1
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.8e-129 465.7 327 67.9
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 4.8e-129 464.9 332 68.4
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 4.8e-129 464.9 327 69.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.2e-129 464.5 331 68.6
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 6.2e-129 464.5 332 68.4
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 6.2e-129 464.5 330 68.5
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 8.1e-129 464.2 327 69.1
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.1e-128 463.8 333 70.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.1e-128 463.8 328 69.8
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.4e-128 462.6 324 70.7
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.2e-127 460.3 335 66.6
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.6e-127 459.1 333 67.3
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.6e-127 459.1 328 69.2
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.6e-127 459.1 330 67.3
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.4e-127 458.8 333 66.4
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 5.8e-127 458.0 328 68.6
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.0e-126 457.2 328 68.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.2e-126 456.1 329 68.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 4.9e-126 454.9 332 68.4
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 8.4e-126 454.1 333 66.7
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.1e-125 453.8 318 70.1
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 9.3e-125 450.7 328 68.6
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 9.3e-125 450.7 328 68.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.5e-124 448.7 332 65.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.3e-123 446.0 331 67.1
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-122 443.7 332 67.2
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 3.3e-122 442.2 338 66.9
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.6e-122 441.4 334 66.5
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 9.6e-122 440.7 333 66.7
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.6e-121 439.9 329 66.6
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.4e-120 436.8 330 66.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 3.1e-120 435.6 337 63.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 9.0e-120 434.1 327 65.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 9.0e-120 434.1 330 65.2
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.0e-118 430.6 332 65.1
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.2e-118 429.5 326 64.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 6.5e-118 427.9 338 65.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 5.5e-117 424.9 333 62.8
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 7.1e-117 424.5 327 64.5
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.6e-116 423.3 329 65.0
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 2.1e-116 422.9 332 64.8
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.1e-116 422.9 329 65.0
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.6e-116 421.8 329 66.0
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 6.1e-116 421.4 303 68.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 4.3e-114 415.2 329 63.8
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 9.7e-114 414.1 333 61.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.2e-113 412.9 327 63.0
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.7e-113 412.1 333 60.1
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 8.5e-110 401.0 332 59.9
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 7.9e-108 394.4 323 64.1
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.0e-107 394.0 327 59.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.8e-107 393.3 327 59.0
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 3.9e-107 392.1 327 59.3
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 5.1e-107 391.7 332 59.3
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.3e-105 387.1 289 68.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 4.8e-105 385.2 328 59.5
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 4.8e-105 385.2 328 61.3
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.3e-105 384.8 304 64.1
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.9e-104 381.3 329 58.4
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.6e-103 379.4 261 75.5
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.7e-102 376.7 377 52.8
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.9e-102 375.9 311 60.5
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 5.0e-102 375.2 329 58.1
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.9e-101 373.2 331 58.3
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-100 370.5 289 63.0
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.5e-90 337.0 249 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.4e-80 303.1 345 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.1e-80 302.8 383 44.9
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.8e-78 295.8 199 72.9
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.3e-75 286.6 347 48.1
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 5.2e-75 285.4 346 49.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.4e-72 276.6 217 66.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.4e-72 276.6 276 52.9
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 7.0e-72 275.0 305 50.2
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.5e-69 267.3 338 45.0
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 7.2e-69 265.0 407 39.8
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 7.0e-64 248.4 278 48.9
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 8.6e-62 241.5 250 54.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.1e-59 233.0 188 61.2
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.7e-49 200.7 306 41.5
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.7e-46 190.7 134 70.9
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 3.0e-46 189.9 369 35.2
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 5.1e-46 189.1 183 53.0
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 3.3e-45 186.4 185 51.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.2e-39 167.9 151 57.0
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 4.7e-36 156.0 124 62.9
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 8.1e-36 155.2 248 38.7
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.8e-35 154.1 143 53.8
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.4e-32 143.7 89 75.3
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 6.0e-31 139.0 109 64.2
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 2.3e-30 137.1 101 66.3
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 2.3e-30 137.1 101 66.3
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.3e-29 133.3 90 67.8
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 6.9e-19 99.0 132 46.2
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.3e-17 94.7 67 65.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 2.7e-15 87.0 67 62.7
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 4.8e-12 76.3 196 29.6
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-10 71.6 39 79.5
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 4.5e-10 69.7 59 61.0
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.9e-08 64.3 57 64.9
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.9e-08 64.3 66 48.5
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.6e-07 59.7 76 42.1
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 6.7e-06 55.8 28 82.1


User provided reference genes

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