Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 0.0e+00 1276.5 646 100.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.4e-279 966.1 533 92.1
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.1e-268 929.9 525 89.5
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.1e-268 927.9 525 89.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.5e-259 898.3 526 84.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.9e-257 892.5 526 83.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.7e-256 887.9 534 81.6
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.2e-256 887.5 534 81.8
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 8.9e-255 883.6 525 83.2
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.0e-254 882.5 534 82.0
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.2e-253 879.0 550 79.5
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 4.9e-253 877.9 527 82.7
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.2e-251 873.2 570 77.9
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 2.7e-251 872.1 554 79.2
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 4.6e-251 871.3 555 78.7
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.3e-250 869.8 525 81.5
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 3.9e-250 868.2 527 82.0
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 8.7e-250 867.1 530 82.1
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 5.6e-249 864.4 531 80.4
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 4.8e-248 861.3 533 80.3
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.4e-247 859.0 533 80.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.4e-247 859.0 536 80.2
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.5e-246 856.3 534 79.0
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 2.0e-246 855.9 548 77.7
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 5.8e-246 854.4 523 79.7
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.8e-246 854.4 534 79.0
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 7.6e-246 854.0 523 79.5
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 9.9e-246 853.6 540 79.3
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 9.9e-246 853.6 533 78.8
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.3e-245 853.2 525 80.0
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.7e-245 852.8 526 79.7
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.2e-245 852.4 543 78.6
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 3.8e-245 851.7 536 78.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 8.4e-245 850.5 548 78.3
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.4e-244 849.7 549 77.4
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.2e-244 848.6 531 78.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 7.1e-244 847.4 573 75.0
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.7e-243 845.5 525 79.0
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.7e-242 842.8 497 82.3
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 3.9e-242 841.6 524 79.6
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 8.7e-242 840.5 536 78.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.1e-241 840.1 514 80.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 7.3e-241 837.4 533 79.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.8e-240 835.5 535 77.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 4.8e-240 834.7 523 78.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.2e-240 834.3 516 78.5
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 6.2e-240 834.3 553 75.8
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.4e-239 833.2 520 79.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.1e-239 832.0 519 77.8
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.3e-239 831.2 511 79.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.3e-237 826.6 523 77.2
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.2e-237 825.9 491 81.9
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 3.8e-237 825.1 514 77.6
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 4.9e-237 824.7 519 76.9
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.4e-236 822.4 518 78.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.2e-236 822.0 514 79.0
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 7.1e-236 820.8 518 76.6
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.2e-235 820.1 514 77.2
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.2e-235 820.1 513 77.8
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.7e-235 818.9 536 77.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 4.6e-235 818.1 511 79.6
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.3e-234 816.6 572 72.4
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.9e-233 812.8 525 77.1
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.6e-232 809.7 502 76.7
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 4.8e-232 808.1 641 66.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 3.1e-231 805.4 563 73.5
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.0e-231 805.1 563 72.6
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.6e-230 802.4 485 80.6
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.4e-230 802.0 516 75.6
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.7e-229 799.7 522 74.7
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 3.8e-229 798.5 462 84.6
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.4e-228 796.6 517 75.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 5.5e-228 794.7 505 75.6
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 9.3e-228 793.9 507 79.7
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.6e-227 793.1 523 74.8
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.7e-227 792.3 511 74.8
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.4e-220 770.0 504 77.4
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 6.1e-219 764.6 530 74.2
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.9e-217 759.6 585 68.2
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.9e-217 759.6 514 74.9
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.4e-215 753.4 526 73.6
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 5.9e-214 748.0 529 72.4
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 7.7e-214 747.7 570 67.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.5e-212 741.5 443 81.5
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 5.1e-210 734.9 511 73.8
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.5e-209 732.6 563 68.0
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 9.7e-209 730.7 476 74.4
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 3.4e-206 722.2 477 76.5
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.3e-205 720.3 459 77.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.5e-205 718.0 440 79.1
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.5e-201 706.8 519 66.5
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.7e-201 704.1 519 67.1
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-197 693.3 460 74.8
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 6.5e-197 691.4 513 72.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 6.3e-192 674.9 551 65.3
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 8.5e-189 664.5 532 66.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.0e-187 657.9 455 72.1
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 5.7e-185 651.7 502 62.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.9e-182 641.7 521 61.8
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 7.2e-180 634.8 536 59.7
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.1e-175 620.9 423 71.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.9e-172 610.1 461 68.1
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-169 600.9 501 63.7
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 4.9e-168 595.5 340 87.1
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.7e-166 589.7 455 69.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.3e-157 560.8 372 78.2
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-154 551.2 486 57.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.4e-154 550.8 490 57.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.0e-149 534.6 322 82.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.0e-146 522.7 322 78.3
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.1e-140 504.6 293 86.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.3e-132 476.5 478 48.3
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.7e-125 454.1 443 59.1
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 4.2e-119 433.0 271 79.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-108 396.4 259 74.5
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.2e-104 384.0 402 55.2
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 5.7e-100 369.4 228 78.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.3e-92 343.6 205 82.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 6.3e-83 312.8 186 80.6
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.2e-80 304.3 183 79.8
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 2.9e-80 303.9 185 77.8
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 3.0e-77 293.9 186 76.9
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.7e-75 287.0 196 71.9
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.3e-72 278.5 481 37.2
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.7e-62 244.2 137 81.0
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 9.5e-55 219.2 139 79.1
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 4.0e-53 213.8 247 51.8
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 7.5e-52 209.5 430 34.0
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.3e-48 198.7 189 55.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-38 165.6 134 61.2
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.1e-38 164.9 361 33.0
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-37 162.5 89 83.1
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-37 162.5 89 83.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.6e-33 148.7 146 56.8
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 1.0e-32 146.0 114 72.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 6.6e-32 143.3 123 61.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 4.4e-28 130.6 151 52.3
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.3e-24 119.0 69 81.2
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 5.6e-23 113.6 66 87.9
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.8e-21 108.6 141 45.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-21 108.2 64 84.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 3.4e-20 104.4 80 62.5
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.3e-19 102.4 52 92.3
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.9e-19 101.3 68 76.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 4.9e-19 100.5 119 46.2
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 1.1e-18 99.4 57 86.0
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.9e-18 98.6 67 65.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 4.2e-18 97.4 106 53.8
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 5.3e-13 80.5 58 70.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.2e-10 71.2 61 57.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.6e-09 68.9 67 58.2
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 4.6e-09 67.4 65 53.8
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 3.9e-08 64.3 72 48.6
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.9e-08 64.3 46 65.2
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.7e-08 63.5 51 60.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.1e-06 58.5 43 65.1


User provided reference genes

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