Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.3e-67 257.3 130 100.0
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.2e-57 226.5 131 87.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.0e-52 209.1 130 83.8
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.1e-50 203.4 131 82.4
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 80.8
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.0e-50 200.7 130 83.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 9.2e-50 200.3 130 82.3
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.2e-49 199.9 130 81.5
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.2e-49 199.9 130 81.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-49 199.5 131 80.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 7.8e-49 197.2 129 80.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 7.8e-49 197.2 130 80.8
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 81.2
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.3e-48 195.7 130 79.2
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.9e-48 195.3 130 81.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.0e-48 194.5 130 80.0
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.5e-47 193.0 130 81.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.9e-47 192.6 134 77.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-47 192.6 130 79.2
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.3e-47 191.8 134 76.1
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 5.6e-47 191.0 130 79.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 9.5e-47 190.3 130 79.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 9.5e-47 190.3 130 78.5
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.5e-47 190.3 125 79.2
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 77.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.8e-46 188.7 130 76.2
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.8e-46 188.7 132 76.5
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.8e-46 188.7 132 74.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.6e-46 188.3 130 76.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 4.7e-46 188.0 130 73.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.4e-45 186.4 130 74.6
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 74.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 2.3e-45 185.7 132 76.5
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.3e-45 185.7 130 75.4
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 3.1e-45 185.3 121 77.7
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.0e-45 184.9 130 73.8
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.0e-45 184.9 130 76.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 4.0e-45 184.9 133 76.7
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.0e-45 184.9 133 75.9
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.2e-45 184.5 124 78.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.2e-45 184.5 124 78.2
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 6.8e-45 184.1 124 78.2
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 6.8e-45 184.1 124 78.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 6.8e-45 184.1 128 74.2
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 6.8e-45 184.1 128 73.4
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 8.9e-45 183.7 130 73.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.2e-44 183.3 130 76.2
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.2e-44 183.3 121 76.0
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.2e-44 183.3 131 77.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.2e-44 183.3 132 76.5
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-44 183.0 121 76.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 75.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.0e-44 182.6 130 74.6
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.6e-44 182.2 128 74.2
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.6e-44 182.2 128 75.0
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.6e-44 182.2 128 75.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.6e-44 182.2 132 75.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.4e-44 181.8 130 73.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.4e-44 181.8 132 75.8
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 3.4e-44 181.8 131 76.3
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.4e-44 181.4 130 76.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.4e-44 181.4 130 73.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.8e-44 181.0 128 75.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.8e-44 181.0 128 75.8
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.8e-44 181.0 131 76.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.7e-43 179.5 130 76.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.7e-43 179.5 130 76.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-43 179.5 121 77.7
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.7e-43 179.5 130 73.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.7e-43 179.5 133 74.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 72.3
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.2e-43 179.1 127 77.2
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 121 75.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 73.1
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.9e-43 178.7 129 76.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.9e-43 178.7 130 75.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.9e-43 178.7 128 71.9
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.9e-43 178.7 128 71.9
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.9e-43 178.7 128 71.9
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 3.7e-43 178.3 129 72.1
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 76.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.7e-43 178.3 130 73.1
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.9e-43 177.9 129 73.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.4e-43 177.6 132 73.5
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 8.3e-43 177.2 123 76.4
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 8.3e-43 177.2 123 76.4
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 8.3e-43 177.2 123 76.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.3e-43 177.2 129 72.9
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.1e-42 176.8 134 73.1
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.4e-42 175.6 127 71.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.2e-42 175.3 115 75.7
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.2e-42 175.3 117 76.9
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 7.0e-42 174.1 132 72.7
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 9.2e-42 173.7 130 70.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.6e-41 172.9 130 72.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 71.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-40 170.2 129 71.3
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.0e-40 168.7 136 71.3
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.0e-40 168.7 128 70.3
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.0e-40 168.7 130 70.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.0e-40 168.7 130 70.0
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.0e-40 167.9 129 71.3
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.1e-39 166.8 129 72.1
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.1e-39 166.8 117 70.1
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.1e-39 166.8 95 85.3
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.5e-39 166.4 129 71.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.6e-39 164.5 95 86.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.3e-39 164.1 117 72.6
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.3e-39 164.1 105 80.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 9.5e-39 163.7 116 73.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 9.5e-39 163.7 132 72.0
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.2e-38 163.3 128 68.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.1e-38 162.5 115 71.3
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.1e-38 162.5 128 71.1
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.7e-38 161.4 118 73.7
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 8.0e-38 160.6 99 83.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-37 160.2 129 69.8
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.4e-37 159.8 120 72.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 130 66.9
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.3e-35 153.3 89 84.3
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.7e-35 151.8 118 69.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.7e-35 151.8 130 65.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.1e-34 150.2 106 74.5
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.1e-34 150.2 83 86.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 5.4e-34 147.9 105 72.4
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 9.2e-34 147.1 106 70.8
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 9.2e-34 147.1 118 66.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.6e-33 146.4 87 81.6
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.1e-33 146.0 106 70.8
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 7.8e-33 144.1 108 67.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.0e-32 143.7 93 76.3
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.6e-32 140.6 115 66.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.5e-31 139.0 111 68.5
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.8e-30 135.6 95 73.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.4e-29 133.3 95 75.8
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.1e-29 132.1 84 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 8.9e-29 130.6 117 59.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.9e-29 130.6 106 65.1
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.8e-28 127.9 126 60.3
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 5.4e-26 121.3 128 57.0
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-25 119.8 69 88.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.1e-25 119.4 124 58.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 8.6e-24 114.0 116 58.6
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.3e-23 112.1 95 63.2
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.2e-22 110.2 76 76.3
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.0e-21 105.1 81 64.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.8e-20 101.3 63 77.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.6e-20 100.9 68 79.4
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.9e-19 99.0 129 52.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 2.4e-18 95.9 84 57.1
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.8e-17 90.9 46 97.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 5.1e-16 88.2 107 47.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-15 86.7 54 77.8
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.8e-13 79.7 68 58.8
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.6e-07 58.2 63 50.8


User provided reference genes

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