Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 0.0e+00 1119.8 569 100.0
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.5e-125 452.6 308 78.6
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.4e-113 414.5 308 71.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.8e-113 414.1 308 71.4
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.1e-112 411.4 308 70.5
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.8e-111 406.8 308 70.5
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 4.1e-110 402.9 308 68.8
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.0e-109 400.6 310 70.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.3e-108 397.9 285 75.8
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.3e-108 397.9 308 67.5
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 1.7e-108 397.5 296 69.6
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 8.5e-108 395.2 295 70.2
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.5e-107 393.7 291 70.4
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.5e-107 393.7 308 67.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 9.4e-107 391.7 294 69.4
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 9.4e-107 391.7 291 70.4
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-106 391.3 291 70.4
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-106 391.3 291 70.4
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.6e-106 391.0 293 70.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.1e-106 390.6 307 68.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 8.0e-106 388.7 308 66.9
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.0e-105 388.3 300 68.0
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.0e-105 388.3 290 68.6
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.0e-105 388.3 316 66.5
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.4e-105 387.9 315 64.4
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.8e-105 387.5 310 65.8
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.8e-105 387.5 291 70.4
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.3e-105 387.1 316 66.5
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.3e-105 387.1 291 68.7
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.3e-105 387.1 291 68.7
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 3.0e-105 386.7 291 70.1
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 3.0e-105 386.7 301 67.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 6.7e-105 385.6 288 70.5
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 8.8e-105 385.2 291 69.4
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.5e-104 384.4 291 68.7
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 5.7e-104 382.5 307 66.4
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 7.4e-104 382.1 288 69.8
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.2e-103 380.6 307 65.1
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.2e-103 380.6 308 65.3
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.7e-103 379.8 316 65.2
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.8e-103 379.4 300 65.3
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 6.3e-103 379.0 309 64.4
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 8.2e-103 378.6 309 64.4
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 8.2e-103 378.6 291 66.3
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.8e-102 377.5 310 64.2
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.8e-102 377.5 289 68.2
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 2.4e-102 377.1 328 62.2
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 3.1e-102 376.7 308 64.0
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.1e-102 376.3 295 66.1
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 7.0e-102 375.6 310 63.2
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.2e-101 374.8 310 64.8
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.2e-101 374.8 310 64.5
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.2e-101 374.8 302 64.2
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.6e-101 374.4 305 64.3
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.6e-101 374.4 291 66.7
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.6e-101 374.4 310 64.5
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.6e-101 374.4 310 64.8
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 2.0e-101 374.0 310 65.8
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.0e-101 374.0 305 64.3
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.0e-101 374.0 344 59.0
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 3.5e-101 373.2 310 63.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 7.7e-101 372.1 295 65.4
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.3e-100 371.3 309 65.7
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-100 370.5 278 69.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.2e-100 370.5 310 63.2
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 2.9e-100 370.2 309 63.8
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.8e-100 369.8 301 64.5
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 3.8e-100 369.8 301 64.5
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 5.0e-100 369.4 292 67.8
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 5.0e-100 369.4 310 61.9
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 6.5e-100 369.0 312 64.7
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.5e-100 368.6 274 70.8
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.5e-99 367.9 292 67.5
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.9e-99 367.5 274 70.4
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.9e-99 367.5 296 64.5
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 2.5e-99 367.1 310 62.6
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.5e-99 367.1 310 62.9
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.5e-99 367.1 297 64.6
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.2e-98 364.8 310 62.6
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-98 364.8 274 69.7
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 1.2e-98 364.8 285 66.0
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.1e-98 364.0 311 62.4
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.1e-98 364.0 285 66.0
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 2.7e-98 363.6 305 63.6
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 2.7e-98 363.6 308 61.4
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 4.7e-98 362.8 299 63.9
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 8.0e-98 362.1 310 62.3
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 8.0e-98 362.1 310 61.9
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.0e-97 361.7 311 62.4
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.0e-97 361.7 326 60.1
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.0e-97 361.7 308 62.0
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.8e-97 360.9 310 62.3
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.3e-97 360.5 297 63.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 3.0e-97 360.1 300 64.0
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 4.0e-97 359.8 313 61.3
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 4.0e-97 359.8 287 64.8
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 6.7e-97 359.0 295 62.7
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 8.8e-97 358.6 292 64.4
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 2.0e-96 357.5 310 61.0
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.6e-96 357.1 311 61.7
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.6e-96 357.1 287 65.2
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 2.6e-96 357.1 310 64.2
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 3.3e-96 356.7 292 65.1
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.7e-95 353.2 291 63.9
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 1.4e-94 351.3 285 63.9
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 4.1e-94 349.7 285 63.5
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 7.0e-94 349.0 307 60.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 2.0e-93 347.4 287 64.1
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.0e-93 347.4 287 64.1
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.0e-93 347.4 325 58.8
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.7e-93 347.1 287 64.1
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.5e-93 346.3 274 68.6
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.0e-92 345.1 293 64.8
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 5.0e-92 342.8 288 61.1
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.6e-90 336.7 290 59.3
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.8e-89 334.3 291 61.5
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-88 331.3 274 66.8
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-88 331.3 291 60.8
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-88 330.9 291 62.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.2e-87 327.4 291 60.1
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.8e-86 324.3 283 59.4
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.1e-86 322.0 284 58.8
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 2.7e-85 320.5 342 52.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 4.5e-85 319.7 287 58.2
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.9e-84 317.0 268 60.4
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.6e-84 315.8 240 67.9
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.5e-83 313.9 288 58.7
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.6e-82 311.2 211 75.8
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 8.0e-82 308.9 292 57.9
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.0e-76 292.0 286 53.1
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 2.6e-72 277.3 298 49.7
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 5.8e-72 276.2 292 55.5
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.5e-69 266.9 298 50.3
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 1.2e-66 258.5 265 54.0
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.3e-65 254.2 215 60.5
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.2e-61 241.9 162 74.1
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 4.6e-61 240.0 207 57.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.9e-59 234.6 215 55.3
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 9.5e-59 232.3 263 49.4
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 2.1e-58 231.1 286 46.2
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 4.0e-57 226.9 209 60.8
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.5e-51 207.6 262 40.8
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.8e-50 204.1 165 64.8
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 4.6e-37 160.2 169 54.4
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 1.6e-34 151.8 185 48.1
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 1.6e-34 151.8 185 48.1
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 6.9e-33 146.4 108 70.4
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 6.9e-33 146.4 108 70.4
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 7.1e-30 136.3 148 54.1
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.9e-27 128.3 98 67.3
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 6.2e-26 123.2 94 60.6
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 9.0e-25 119.4 76 78.9
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.1e-19 102.4 82 61.0
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 8.2e-18 96.3 106 51.9
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 7.6e-16 89.7 104 48.1
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.5e-14 84.7 52 82.7
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 6.0e-13 80.1 58 72.4
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 3.0e-12 77.8 84 46.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 8.7e-12 76.3 101 49.5
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 5.7e-11 73.6 85 44.7
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.6e-10 72.0 55 65.5
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 6.3e-10 70.1 55 65.5
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 5.3e-09 67.0 83 44.6
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.0e-08 65.1 58 53.4
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.0e-08 65.1 68 61.8
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 5.9e-08 63.5 65 49.2
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 3.2e-06 57.8 46 58.7
Rhsim02G0050900 Rhododendron simsii HOM05D002672 ORTHO05D002887 3.2e-06 57.8 71 42.3


User provided reference genes

Program Settings