Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 0.0e+00 1768.4 933 100.0
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1143.6 821 76.9
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 4.4e-287 991.5 911 63.9
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 8.0e-281 970.7 908 62.1
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 3.4e-263 912.1 903 59.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 7.1e-261 904.4 897 59.0
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 2.4e-253 879.4 922 56.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 3.5e-252 875.5 905 55.7
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 7.3e-250 867.8 906 55.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 6.9e-248 861.3 907 55.9
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.2e-247 860.5 896 56.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 5.8e-247 858.2 898 56.0
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.3e-246 857.1 895 55.3
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 2.1e-244 849.7 895 54.9
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.3e-243 847.0 906 54.5
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 1.1e-242 844.0 894 54.9
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.3e-242 841.3 895 54.5
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 2.4e-240 836.3 722 63.2
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 3.1e-240 835.9 909 54.5
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 9.0e-240 834.3 897 54.6
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 7.9e-236 821.2 907 53.6
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 3.3e-234 815.8 907 53.1
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 9.6e-234 814.3 889 52.4
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 1.1e-232 810.8 899 52.7
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 4.0e-232 808.9 910 53.7
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 6.9e-232 808.1 902 52.5
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.5e-231 807.0 902 52.5
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.4e-231 805.8 895 53.1
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.0e-230 804.3 890 54.6
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 2.9e-230 802.7 909 51.8
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 7.1e-229 798.1 900 51.7
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.6e-228 797.0 885 53.0
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 3.0e-227 792.7 898 53.1
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 6.7e-227 791.6 865 53.8
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 4.1e-224 782.3 922 51.5
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.5e-223 780.4 895 52.1
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 7.9e-220 768.1 899 50.7
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 3.0e-219 766.1 922 50.7
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.3e-217 760.8 904 51.3
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 2.2e-217 760.0 873 52.0
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 3.7e-217 759.2 915 49.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.4e-216 756.5 906 50.6
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 5.9e-215 751.9 896 48.7
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.3e-214 750.7 899 50.4
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 3.2e-213 746.1 724 57.6
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 1.2e-212 744.2 933 48.9
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 4.6e-212 742.3 1028 45.8
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 6.1e-212 741.9 927 49.5
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 7.9e-212 741.5 893 49.5
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.4e-211 740.7 902 49.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 2.0e-210 736.9 953 47.5
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.7e-210 735.3 897 48.7
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.1e-208 729.2 896 48.9
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 8.5e-206 721.5 896 48.4
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 3.2e-205 719.5 704 55.4
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 2.1e-204 716.8 906 48.1
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 3.6e-204 716.1 872 49.4
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 7.9e-204 714.9 895 48.3
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 4.8e-201 705.7 930 46.0
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.1e-200 704.5 876 49.1
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 3.1e-200 703.0 898 47.4
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 3.1e-200 703.0 898 47.4
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 7.7e-199 698.4 877 47.9
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.9e-198 696.4 899 47.1
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 6.5e-198 695.3 976 45.1
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 4.2e-197 692.6 906 46.9
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 3.6e-196 689.5 894 48.4
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.0e-195 688.0 898 47.2
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.3e-194 682.9 927 46.8
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 8.5e-190 668.3 712 54.6
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 9.4e-181 638.3 724 50.8
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 9.4e-181 638.3 924 43.4
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 2.8e-177 626.7 665 54.6
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.5e-170 604.4 913 43.6
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.4e-163 581.3 875 43.1
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 6.6e-158 562.4 777 44.8
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.5e-157 561.2 905 39.4
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 7.5e-154 548.9 608 53.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 9.5e-149 531.9 435 64.1
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.3e-145 521.5 440 62.5
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 4.7e-140 503.1 730 42.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 6.8e-139 499.2 1028 37.6
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.9e-137 493.8 552 52.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.3e-134 485.0 702 45.0
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.8e-131 474.6 742 38.9
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 4.9e-129 466.5 675 43.9
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.3e-124 451.8 698 41.4
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.6e-124 451.4 598 47.8
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.8e-124 450.7 790 38.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.5e-114 418.3 592 45.4
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.8e-102 378.3 690 37.7
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 8.7e-102 375.9 439 47.4
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.5e-90 338.6 739 33.6
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-81 308.9 390 47.9
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 5.0e-73 280.4 189 76.7
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.1e-67 262.7 177 80.2
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.6e-61 241.5 540 34.3
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.6e-58 232.3 189 64.6
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 7.8e-58 229.9 194 64.4
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.0e-55 219.9 258 49.2
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.7e-52 212.2 246 54.1
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.4e-51 208.4 256 51.2
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 4.1e-51 207.6 189 59.8
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 7.3e-48 196.8 694 26.8
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.8e-45 187.2 584 31.0
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 8.6e-41 173.3 139 68.3
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.5e-37 162.5 163 62.6
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.2e-34 152.9 99 75.8
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 2.3e-33 148.7 271 40.6
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.1e-32 146.4 270 38.9
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 7.8e-26 123.6 113 60.2
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.9e-24 119.0 98 61.2
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 8.1e-23 113.6 92 70.7
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.9e-20 105.1 71 77.5
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.3e-19 100.1 122 48.4
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.2e-18 99.8 236 35.2
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-18 99.4 60 76.7
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.3e-17 96.3 92 59.8
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 2.3e-17 95.5 482 24.1
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 3.0e-17 95.1 72 65.3
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 1.5e-16 92.8 110 46.4
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 2.4e-14 85.5 97 49.5
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.6e-13 82.0 62 64.5
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 4.5e-13 81.3 94 51.1
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 4.5e-13 81.3 275 29.5
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.9e-13 80.1 86 54.7
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.8e-12 78.2 65 66.2
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 6.0e-10 70.9 89 50.6
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.0e-09 70.1 52 65.4
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.0e-09 68.6 73 54.8
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.8e-06 59.3 101 40.6


User provided reference genes

Program Settings