Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 0.0e+00 1617.4 830 100.0
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 6.3e-269 931.0 895 59.7
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 7.1e-172 608.6 873 43.6
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 7.0e-135 485.7 900 37.3
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 2.7e-123 447.2 819 39.9
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 6.4e-88 329.7 740 33.2
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 2.7e-86 324.3 805 31.6
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 9.6e-84 315.8 802 31.5
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 2.8e-83 314.3 855 30.9
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 2.3e-77 294.7 764 32.5
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 2.2e-72 278.1 780 30.6
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 1.1e-71 275.8 724 31.4
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 3.2e-71 274.2 858 28.3
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 2.7e-70 271.2 833 30.6
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.9e-68 265.0 826 30.3
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 1.6e-67 261.9 860 29.7
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 5.3e-66 256.9 484 36.6
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 1.4e-63 248.8 881 27.0
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 2.4e-63 248.1 469 35.2
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 1.2e-62 245.7 882 27.0
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.3e-61 241.5 298 43.6
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 1.1e-60 239.2 337 44.8
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.9e-60 238.4 837 28.6
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 5.6e-60 236.9 334 40.1
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 1.1e-58 232.6 304 42.8
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 2.4e-58 231.5 413 37.3
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 6.5e-56 223.4 289 42.9
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 5.5e-55 220.3 372 37.4
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 9.3e-55 219.5 748 29.0
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.3e-51 209.1 305 40.7
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 1.6e-51 208.8 777 27.5
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 3.1e-50 204.5 248 46.8
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 4.1e-50 204.1 302 41.1
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 5.3e-50 203.8 302 40.1
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 9.0e-50 203.0 308 39.6
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 1.2e-49 202.6 308 39.6
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 1.7e-48 198.7 306 39.5
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 2.9e-48 198.0 644 30.3
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 3.8e-48 197.6 306 39.5
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 3.8e-48 197.6 306 39.5
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 3.4e-41 174.5 210 47.6
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 2.1e-38 165.2 306 35.9
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 2.3e-37 161.8 222 41.4
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 5.1e-37 160.6 775 24.8
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 5.1e-37 160.6 322 34.8
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 2.5e-36 158.3 748 26.9
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 5.7e-36 157.1 193 46.6
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 5.5e-31 140.6 490 29.0
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 7.2e-31 140.2 494 28.5
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 2.1e-30 138.7 204 40.2
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 3.0e-29 134.8 140 47.1
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 2.5e-15 88.6 362 24.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.7e-14 85.1 151 34.4
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 2.3e-13 82.0 151 35.1
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 6.8e-13 80.5 306 27.8
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.5e-12 79.3 135 38.5
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.7e-11 75.9 338 24.9
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 6.3e-11 73.9 361 23.3
GSVIVG01027843001 Vitis vinifera HOM05D008307 ORTHO05D010374 4.5e-09 67.8 251 31.5


User provided reference genes

Program Settings