Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.2e-246 855.1 410 100.0
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.2e-119 434.1 409 58.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.2e-101 372.5 405 51.9
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 4.9e-97 359.0 404 49.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 6.2e-92 342.0 388 48.7
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.4e-88 328.9 386 48.2
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 7.0e-88 328.6 373 48.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 9.2e-88 328.2 388 46.9
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 2.0e-87 327.0 393 48.1
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 3.5e-87 326.2 387 47.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 1.3e-86 324.3 387 46.3
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 8.6e-86 321.6 367 49.3
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.5e-85 320.9 370 47.3
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.9e-85 320.5 391 46.5
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.5e-85 320.1 415 46.5
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 4.3e-85 319.3 397 46.9
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 7.3e-85 318.5 392 45.9
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.1e-84 317.0 393 45.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.8e-84 316.6 391 46.3
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.8e-83 313.9 394 46.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 4.0e-83 312.8 393 46.6
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 6.8e-83 312.0 398 44.2
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.5e-82 310.8 364 46.2
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.0e-82 310.5 400 43.5
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.8e-82 308.9 386 45.6
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 5.8e-82 308.9 384 46.6
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 5.8e-82 308.9 384 46.6
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 7.5e-82 308.5 378 45.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 9.8e-82 308.1 384 45.3
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.3e-81 307.8 378 45.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.7e-81 307.4 386 45.3
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.2e-81 307.0 364 46.7
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.9e-81 306.6 362 46.4
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 2.9e-81 306.6 401 44.4
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 3.7e-81 306.2 402 44.0
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 4.9e-81 305.8 389 45.8
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 4.9e-81 305.8 386 46.6
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 6.4e-81 305.4 404 43.6
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 6.4e-81 305.4 395 45.3
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.4e-80 304.3 390 44.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.9e-80 303.9 365 46.3
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 2.4e-80 303.5 387 44.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.4e-80 303.5 403 43.2
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 3.2e-80 303.1 398 45.0
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 3.2e-80 303.1 404 41.8
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 3.2e-80 303.1 379 45.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 4.1e-80 302.8 338 47.0
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 7.1e-80 302.0 392 44.6
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 9.2e-80 301.6 361 46.8
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 9.2e-80 301.6 408 41.7
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.2e-79 301.2 364 45.1
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.1e-79 300.4 404 43.1
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 2.1e-79 300.4 372 45.7
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.7e-79 300.1 363 46.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.7e-79 300.1 402 43.5
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 6.0e-79 298.9 406 42.1
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.7e-78 297.4 372 45.4
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-78 297.0 402 43.8
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.3e-78 297.0 392 42.3
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 2.3e-78 297.0 394 41.6
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.1e-78 295.8 409 43.5
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-77 294.3 403 42.2
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.5e-77 293.5 395 43.8
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.5e-77 293.5 404 43.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 4.3e-77 292.7 406 42.4
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 5.6e-77 292.4 367 44.1
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 5.6e-77 292.4 395 42.8
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 7.3e-77 292.0 390 43.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.3e-77 292.0 368 45.4
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 9.5e-77 291.6 367 44.1
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 9.5e-77 291.6 385 44.2
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 2.1e-76 290.4 405 40.5
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.8e-76 290.0 395 42.8
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.8e-76 290.0 400 43.2
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 6.2e-76 288.9 396 42.2
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.2e-76 288.9 427 39.8
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.3e-75 287.0 359 44.6
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 2.3e-75 287.0 351 45.3
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 3.1e-75 286.6 380 42.6
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.2e-75 285.8 358 44.7
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 8.9e-75 285.0 378 43.9
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.2e-74 284.6 381 42.3
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.2e-74 284.6 380 42.1
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.5e-74 284.3 397 41.1
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 5.8e-74 282.3 391 40.4
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.6e-74 282.0 365 44.1
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.9e-74 281.6 210 65.7
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.3e-73 281.2 397 42.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.3e-73 281.2 204 66.7
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.3e-73 281.2 363 44.1
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.3e-73 281.2 366 44.5
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.7e-73 280.8 387 42.1
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 8.4e-73 278.5 397 40.3
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 8.4e-73 278.5 185 70.8
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.4e-73 278.5 262 56.9
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 8.4e-73 278.5 352 44.3
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 3.2e-72 276.6 384 42.7
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 3.2e-72 276.6 400 40.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.4e-72 275.8 360 42.8
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.2e-71 274.6 360 42.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.2e-71 274.6 360 42.5
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 1.2e-71 274.6 183 70.5
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.1e-71 273.9 393 42.2
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 7.8e-71 271.9 407 39.3
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.3e-70 271.2 355 42.3
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.5e-69 267.7 355 42.8
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 3.3e-69 266.5 358 42.7
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 9.6e-69 265.0 358 42.7
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.4e-66 256.5 357 41.5
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.2e-65 253.8 408 40.0
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.2e-65 253.8 401 39.4
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 8.4e-65 251.9 411 38.2
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.8e-63 245.4 189 63.0
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 5.6e-61 239.2 170 69.4
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.8e-60 236.9 225 54.7
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.4e-58 229.9 406 38.7
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 3.4e-58 229.9 185 62.2
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.2e-55 221.5 216 50.0
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.5e-53 214.5 392 34.9
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.1e-52 208.8 382 35.9
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 2.4e-51 207.2 431 34.8
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 7.6e-50 202.2 401 35.7
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.9e-49 199.5 399 35.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 8.4e-49 198.7 160 58.8
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.5e-45 188.0 191 52.4
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.5e-45 188.0 140 65.7
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.3e-44 184.9 137 62.8
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.8e-43 181.0 274 37.6
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-38 164.9 268 37.7
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.1e-37 161.8 267 35.2
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.7e-37 159.5 270 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 4.1e-27 126.7 262 30.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.6e-26 124.0 137 48.2
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.4e-24 118.2 76 72.4
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 7.4e-21 105.9 162 35.2
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.6e-15 88.2 224 28.1
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.3e-13 80.5 98 44.9
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.3e-12 78.6 109 45.9
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 5.5e-08 63.2 74 50.0
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 9.4e-08 62.4 63 52.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.7e-07 60.8 29 82.8


User provided reference genes

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