Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 0.0e+00 1748.0 879 100.0
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 0.0e+00 1274.2 870 77.9
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1186.4 825 75.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1173.3 787 77.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1157.1 786 76.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1145.2 791 75.7
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1135.2 733 79.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1132.9 790 74.9
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1086.6 737 75.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1084.3 735 75.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1082.4 738 74.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 0.0e+00 1078.5 756 73.9
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.8e-307 1058.5 737 73.8
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.8e-306 1055.8 735 74.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.2e-304 1048.9 737 72.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.7e-304 1048.1 736 72.4
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.4e-303 1046.2 733 72.9
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.4e-303 1045.4 727 72.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.6e-302 1042.7 736 72.3
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.7e-302 1042.0 733 73.8
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 7.8e-302 1040.4 787 70.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.0e-301 1038.5 787 69.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 6.6e-301 1037.3 735 72.0
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 8.6e-301 1036.9 732 72.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.5e-300 1035.4 739 71.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.3e-300 1035.0 736 71.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.6e-300 1034.2 737 73.3
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.6e-299 1032.7 731 72.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.1e-299 1032.3 740 71.6
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-299 1032.3 732 71.9
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.8e-299 1031.9 736 72.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.6e-299 1031.6 731 72.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.7e-299 1031.2 735 71.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.0e-298 1028.1 740 71.2
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 6.8e-298 1027.3 734 71.9
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.9e-298 1026.9 738 71.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-297 1025.4 735 70.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.9e-295 1019.2 735 71.3
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.2e-294 1016.5 734 71.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.7e-294 1015.4 734 71.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.5e-292 1008.8 788 67.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.8e-291 1005.4 713 73.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.1e-290 1003.4 738 70.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 4.9e-288 994.6 736 70.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.4e-287 993.0 733 71.2
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 9.2e-287 990.3 753 68.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.0e-286 987.6 790 66.6
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.7e-285 986.1 733 70.5
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.3e-285 985.7 732 69.5
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.9e-285 984.9 735 68.8
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 5.1e-285 984.6 740 68.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.5e-284 982.2 734 69.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 7.3e-284 980.7 733 69.6
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.1e-283 979.2 725 69.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.4e-282 975.7 818 64.5
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 4.0e-282 974.9 737 68.1
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 7.6e-281 970.7 726 68.5
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 6.4e-280 967.6 734 68.1
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.4e-279 965.7 712 70.2
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.2e-279 965.3 735 68.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.7e-277 959.5 735 68.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 5.1e-277 958.0 731 67.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 5.1e-277 958.0 741 66.8
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.6e-276 954.5 739 66.4
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 5.6e-276 954.5 711 69.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 9.6e-276 953.7 732 67.2
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.3e-275 953.4 707 71.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.1e-275 952.6 735 66.8
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.8e-275 952.2 736 67.9
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 8.1e-275 950.7 727 67.5
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.0e-274 948.3 730 66.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 5.8e-273 944.5 738 66.9
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 7.6e-273 944.1 734 65.9
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.9e-272 942.2 752 66.0
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 4.9e-272 941.4 728 67.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.4e-271 939.9 740 66.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.9e-271 939.5 738 66.0
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 7.1e-271 937.6 792 64.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 7.1e-271 937.6 730 66.0
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.6e-270 936.4 730 66.3
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.1e-270 936.0 732 66.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 5.1e-269 931.4 752 65.8
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.6e-269 931.0 739 65.2
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.3e-268 928.7 666 73.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 5.6e-268 927.9 739 65.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 7.3e-268 927.5 732 66.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.6e-267 925.2 729 65.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.2e-267 924.5 729 66.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 5.8e-265 917.9 737 65.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.8e-264 915.2 743 65.1
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 6.4e-264 914.4 740 64.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.2e-263 912.1 685 69.6
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 7.1e-263 911.0 740 64.9
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 4.6e-262 908.3 744 64.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 4.6e-262 908.3 744 64.2
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.3e-261 906.7 743 65.5
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-261 906.4 748 64.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.8e-261 906.4 744 64.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 8.1e-259 897.5 739 64.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.9e-258 894.4 732 63.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-257 893.6 728 65.7
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.0e-257 892.9 745 63.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-256 888.6 840 58.9
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.5e-255 885.9 740 63.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 9.3e-255 884.0 736 63.2
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.0e-253 879.0 738 62.7
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.4e-252 874.4 731 63.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.1e-251 872.8 642 72.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.4e-250 869.4 740 63.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-245 852.8 555 80.5
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.7e-245 850.9 735 61.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 8.2e-243 844.3 833 57.4
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-240 837.4 582 75.4
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.2e-240 836.3 737 60.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.9e-240 835.9 842 56.9
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.3e-235 820.5 789 57.7
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.9e-232 809.3 676 65.5
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.0e-232 808.5 569 75.2
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 7.9e-230 801.2 558 75.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 8.2e-227 791.2 738 57.5
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 7.7e-225 784.6 732 58.6
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 4.1e-218 762.3 646 64.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.5e-215 753.1 742 57.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.6e-212 743.0 739 56.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 4.4e-204 715.7 740 53.5
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.2e-199 698.4 604 63.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-192 677.6 732 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 5.0e-192 675.6 680 55.6
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.2e-186 656.4 499 67.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 6.0e-177 625.5 737 48.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-156 557.4 611 53.8
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.4e-146 523.9 333 78.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.5e-143 513.8 877 39.6
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.5e-123 446.0 449 56.3
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.4e-122 442.2 262 85.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.4e-117 427.6 261 83.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-91 342.0 390 50.3
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.9e-83 314.3 501 39.3
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.8e-81 307.8 345 50.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.5e-63 248.8 553 35.4
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 5.4e-53 213.8 311 42.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.7e-52 211.5 189 59.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.6e-49 202.2 125 78.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.3e-42 177.9 137 67.9
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.6e-41 175.6 146 65.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 4.2e-37 161.0 345 34.8
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.5e-34 151.8 196 46.4
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 9.6e-34 149.8 128 59.4
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.2e-31 142.9 121 61.2
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.4e-31 141.4 162 50.0
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.8e-30 137.9 177 46.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.2e-28 132.9 121 62.0
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.8e-24 119.0 327 30.9
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 6.7e-19 100.5 94 55.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 5.3e-16 90.9 85 51.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.5e-15 89.4 58 72.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.7e-12 78.6 54 68.5
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.3e-11 76.3 51 70.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-10 73.2 55 60.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-10 73.2 55 60.0
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.3e-09 69.7 66 48.5
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.7e-09 68.2 37 86.5
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 5.0e-06 57.8 298 25.2
Nn1g02457 Nelumbo nucifera HOM05D004359 ORTHO05D005052 8.5e-06 57.0 38 71.1


User provided reference genes

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