Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 2132.8 1078 100.0
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1675.6 1090 81.7
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1586.2 1089 77.4
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1581.2 1089 77.2
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 1091 74.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 1094 73.2
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 1088 73.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 1090 73.5
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 1089 72.6
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 1089 72.2
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 1084 72.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 1088 72.6
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 1094 72.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 1099 71.6
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 1083 73.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 1091 71.8
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 1061 73.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 1092 72.3
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 974 78.4
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 1097 72.0
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 1099 71.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 1091 72.4
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 1102 71.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1457.6 1096 71.2
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 1090 71.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 1117 70.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1452.2 1083 71.6
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 1095 71.3
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 1114 70.0
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 1092 71.5
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1444.5 1095 70.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 1091 71.3
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 1088 70.7
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 993 76.1
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1439.5 1097 70.6
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 1095 70.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 982 75.7
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 1127 69.7
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1434.9 1066 72.1
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1434.1 1095 70.9
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1434.1 1031 73.3
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 1094 69.6
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1431.8 1102 70.2
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1431.8 1092 70.4
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 1095 69.6
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 993 74.7
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 952 79.0
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 974 75.1
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 1089 70.3
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1426.4 1089 70.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 1086 70.3
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 970 76.1
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1422.1 1094 68.9
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 1020 72.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 1004 73.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 1094 69.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1414.4 1008 73.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 957 76.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 995 74.4
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 1004 73.7
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 1104 68.3
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 1104 68.3
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1409.4 1104 68.2
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 1090 69.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 967 74.7
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1404.0 956 76.0
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1402.1 970 75.5
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1400.2 1105 68.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1396.7 973 73.6
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 1089 67.7
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1392.9 967 74.5
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1391.3 1006 71.5
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1386.7 974 73.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 1075 69.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 974 73.1
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1382.5 967 73.9
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 1096 68.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1379.4 1002 71.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1377.8 970 73.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 1031 69.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 1006 70.9
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 973 72.5
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 1006 70.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 1083 67.2
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 1033 68.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1370.5 1006 70.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1369.8 978 72.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1366.3 973 71.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1362.8 1086 66.0
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1361.3 1061 67.4
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1361.3 1004 69.8
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1361.3 1061 67.4
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 1032 68.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1359.7 978 71.8
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1359.7 991 72.4
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1358.2 1032 68.4
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 1032 68.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 1006 70.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1356.3 1079 66.2
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1352.4 957 72.0
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 1011 69.3
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1350.5 967 71.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1349.7 973 71.1
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1345.9 974 71.5
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1343.2 974 71.8
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1342.8 1018 68.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1340.9 995 70.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1338.2 999 70.1
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1336.2 887 77.2
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1334.3 997 69.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1322.0 1089 66.1
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 946 72.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 976 69.9
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1312.7 1054 67.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1283.9 813 78.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1283.5 990 69.0
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1280.0 1020 64.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1278.1 802 81.9
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1273.5 975 67.2
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 936 69.8
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1266.9 1006 65.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1261.5 1006 64.6
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1258.8 972 68.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1250.3 995 66.9
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1232.6 821 77.6
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1223.8 981 68.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1217.6 988 66.8
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1205.7 980 68.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1173.3 892 68.0
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1161.0 843 70.5
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1115.9 966 60.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1095.5 967 60.9
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1088.9 968 59.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 2.1e-301 1039.3 746 71.4
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.8e-285 985.7 694 72.8
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 7.9e-272 941.0 976 52.8
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.5e-254 882.9 570 78.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 4.7e-240 835.5 1003 48.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-198 698.0 553 68.5
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-198 698.0 618 62.3
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.9e-197 693.3 492 73.8
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.3e-177 626.7 564 61.0
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 6.6e-170 602.4 403 76.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 9.0e-167 592.0 764 46.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.3e-165 588.2 499 64.1
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 2.6e-142 510.8 451 61.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 6.1e-139 499.6 409 64.3
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.4e-121 440.3 409 59.7
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.0e-102 378.3 337 61.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-97 362.1 536 42.7
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.1e-95 355.9 232 77.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 8.3e-88 329.7 276 63.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-64 251.5 245 58.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 6.0e-62 243.8 234 56.4
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.9e-47 195.7 119 79.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.9e-47 195.7 151 68.9
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 6.9e-42 177.2 268 42.9
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-30 139.4 83 83.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.6e-30 139.4 91 73.6
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 4.2e-23 114.8 130 53.1
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.2e-23 114.8 67 83.6
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-22 112.5 113 55.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.7e-21 107.5 99 57.6
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 7.4e-20 104.0 69 72.5
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 9.7e-20 103.6 396 27.3
CSS0003111 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D113168 3.1e-18 98.6 106 55.7
CSS0017095 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D109714 3.1e-18 98.6 106 55.7
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.1e-18 98.6 56 75.0
CSS0048935 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D110355 6.9e-18 97.4 106 54.7
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.8e-11 74.7 49 75.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 8.2e-11 73.9 46 78.3
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.2e-09 70.1 101 44.6
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-09 68.2 47 70.2
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.0e-08 67.0 43 72.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.7e-08 66.2 40 80.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.9e-08 65.5 52 65.4


User provided reference genes

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