Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08170 Vaccinium macrocarpon HOM05D003304 ORTHO05D003762 2.6e-191 672.2 403 100.0
Rhsim04G0224500 Rhododendron simsii HOM05D003304 ORTHO05D003762 5.9e-87 325.5 382 59.9
Actinidia19582 Actinidia chinensis HOM05D003304 ORTHO05D003762 2.9e-54 216.9 397 47.1
Actinidia40286 Actinidia chinensis HOM05D003304 ORTHO05D003762 3.1e-48 196.8 391 44.0
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 5.9e-47 192.6 383 47.5
Actinidia14289 Actinidia chinensis HOM05D003304 ORTHO05D003762 3.6e-44 183.3 380 43.7
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 3.4e-42 176.8 416 41.1
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 9.8e-42 175.3 387 41.9
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 1.7e-41 174.5 399 43.1
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 5.4e-40 169.5 363 41.0
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 5.4e-40 169.5 410 42.0
Rhsim02G0007700 Rhododendron simsii HOM05D003304 ORTHO05D003762 9.2e-40 168.7 375 42.7
MSTRG.3901 Avicennia marina HOM05D003304 ORTHO05D003762 1.6e-39 167.9 396 40.2
Nitab4.5_0005362g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 1.0e-38 165.2 379 44.1
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 1.7e-38 164.5 397 40.3
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 1.7e-38 164.5 414 41.8
Oeu006408.1 Olea europaea HOM05D003304 ORTHO05D003762 2.3e-38 164.1 383 44.1
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 3.3e-37 160.2 413 42.1
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 5.6e-37 159.5 398 39.2
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 9.5e-37 158.7 401 40.1
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 2.1e-36 157.5 417 43.4
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 2.1e-36 157.5 417 43.4
DCAR_023290 Daucus carota HOM05D003304 ORTHO05D003762 3.6e-36 156.8 395 40.8
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 3.6e-36 156.8 395 41.8
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 1.0e-35 155.2 403 38.0
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 1.4e-35 154.8 395 41.8
SalBow2G2784 Salvia bowleyana HOM05D003304 ORTHO05D003762 1.4e-35 154.8 288 48.6
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 2.3e-35 154.1 399 38.1
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 3.0e-35 153.7 399 38.1
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 3.0e-35 153.7 426 36.9
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 4.0e-35 153.3 396 40.2
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 4.0e-35 153.3 393 36.1
MELO3C021319.2 Cucumis melo HOM05D003304 ORTHO05D003762 5.2e-35 152.9 407 38.1
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 5.2e-35 152.9 395 40.8
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 5.2e-35 152.9 399 37.6
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 6.8e-35 152.5 403 41.4
Lalb_Chr13g0303541 Lupinus albus HOM05D003304 ORTHO05D003762 2.0e-34 151.0 406 37.4
Nitab4.5_0000570g0270 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.6e-34 150.6 372 35.5
Duzib052G0413 Durio zibethinus HOM05D003304 ORTHO05D003762 3.4e-34 150.2 403 40.9
ClCG06G005040 Citrullus lanatus HOM05D003304 ORTHO05D003762 4.4e-34 149.8 401 37.2
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 2.2e-33 147.5 426 39.9
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 4.9e-33 146.4 399 37.6
CsaV3_6G023920 Cucumis sativus L. HOM05D003304 ORTHO05D003762 4.9e-33 146.4 403 37.5
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 1.1e-32 145.2 376 38.3
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 1.1e-32 145.2 429 40.1
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 2.4e-32 144.1 393 36.1
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 4.1e-32 143.3 276 41.7
SGA_v2.0_scaffold67G22614 Striga asiatica HOM05D003304 ORTHO05D003762 4.1e-32 143.3 398 39.2
SalBow5G3057 Salvia bowleyana HOM05D003304 ORTHO05D003762 7.0e-32 142.5 373 41.0
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 9.2e-32 142.1 424 39.6
CANSAT78G0081 Cannabis sativa HOM05D003304 ORTHO05D003762 1.2e-31 141.7 459 38.6
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 1.6e-31 141.4 390 36.4
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 2.0e-31 141.0 393 38.9
SGA_v2.0_scaffold18G08346 Striga asiatica HOM05D003304 ORTHO05D003762 6.0e-31 139.4 400 39.8
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 1.0e-30 138.7 176 56.8
DCAR_027060 Daucus carota HOM05D003304 ORTHO05D003762 1.0e-30 138.7 404 36.9
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 1.3e-30 138.3 405 37.0
Oeu016250.1 Olea europaea HOM05D003304 ORTHO05D003762 3.0e-30 137.1 369 34.1
Solyc01g066640.2 Solanum lycopersicum HOM05D003304 ORTHO05D003762 3.9e-30 136.7 394 35.8
CAN.G261.4 Capsicum annuum HOM05D003304 ORTHO05D003762 5.0e-30 136.3 389 37.3
PGSC0003DMG400035598 Solanum tuberosum HOM05D003304 ORTHO05D003762 1.5e-29 134.8 406 35.7
Solyc12g099450.3 Solanum lycopersicum HOM05D003304 ORTHO05D003762 1.9e-29 134.4 371 34.0
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 2.5e-29 134.0 419 37.5
CAN.G484.45 Capsicum annuum HOM05D003304 ORTHO05D003762 4.3e-29 133.3 349 35.0
Sed0009993 Sechium edule HOM05D003304 ORTHO05D003762 4.3e-29 133.3 386 40.2
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 5.6e-29 132.9 388 39.4
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 5.6e-29 132.9 388 39.4
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 5.6e-29 132.9 388 39.4
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 7.3e-29 132.5 377 36.9
Medtr2g436340 Medicago truncatula HOM05D003304 ORTHO05D003762 7.3e-29 132.5 402 33.8
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 9.5e-29 132.1 390 36.2
Oeu016249.1 Olea europaea HOM05D003304 ORTHO05D003762 9.5e-29 132.1 372 33.9
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 1.2e-28 131.7 424 34.9
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 1.2e-28 131.7 230 46.5
Phvul.003G096600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 1.6e-28 131.3 402 35.1
vmacro15219 Vaccinium macrocarpon HOM05D003304 ORTHO05D003762 1.6e-28 131.3 179 56.4
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 3.6e-28 130.2 429 37.1
PGR004G2799 Punica granatum HOM05D003304 ORTHO05D003762 3.6e-28 130.2 404 34.2
TWI73G0854 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 3.6e-28 130.2 363 38.8
Sed0002765 Sechium edule HOM05D003304 ORTHO05D003762 4.7e-28 129.8 413 35.6
BcaC03g17699 Brassica carinata HOM05D003304 ORTHO05D003762 6.2e-28 129.4 272 42.3
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 6.2e-28 129.4 406 35.7
Eucgr.H03942 Eucalyptus grandis HOM05D003304 ORTHO05D003762 8.0e-28 129.0 368 34.5
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 8.0e-28 129.0 390 34.6
Sopen12g034120 Solanum pennellii HOM05D003304 ORTHO05D003762 1.4e-27 128.3 371 33.7
PGSC0003DMG400004631 Solanum tuberosum HOM05D003304 ORTHO05D003762 2.3e-27 127.5 371 34.0
Lalb_Chr07g0177821 Lupinus albus HOM05D003304 ORTHO05D003762 5.2e-27 126.3 290 40.7
Migut.N00085 Erythranthe guttata HOM05D003304 ORTHO05D003762 1.2e-26 125.2 388 36.3
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 1.2e-26 125.2 408 35.8
Eucgr.B01602 Eucalyptus grandis HOM05D003304 ORTHO05D003762 1.5e-26 124.8 256 41.0
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 1.5e-26 124.8 364 37.1
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 2.6e-26 124.0 172 50.0
Glyma.07G246500 Glycine max HOM05D003304 ORTHO05D003762 3.4e-26 123.6 405 38.3
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 5.8e-26 122.9 279 39.1
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 7.5e-26 122.5 402 38.1
EL10Ac3g06624 Beta vulgaris HOM05D003304 ORTHO05D003762 7.5e-26 122.5 416 37.3
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 9.8e-26 122.1 419 37.2
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 9.8e-26 122.1 410 37.1
Sabra08G0152100 Salix brachista HOM05D003304 ORTHO05D003762 3.7e-25 120.2 409 36.2
Nn4g22032 Nelumbo nucifera HOM05D003304 ORTHO05D003762 4.9e-25 119.8 347 34.3
CDE02G3640 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 6.4e-25 119.4 371 32.1
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 8.3e-25 119.0 392 35.2
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 8.3e-25 119.0 400 37.5
Lalb_Chr18g0051571 Lupinus albus HOM05D003304 ORTHO05D003762 8.3e-25 119.0 249 41.8
PGR031G2491 Punica granatum HOM05D003304 ORTHO05D003762 8.3e-25 119.0 383 40.7
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 1.1e-24 118.6 391 37.9
Sopen01g028290 Solanum pennellii HOM05D003304 ORTHO05D003762 1.4e-24 118.2 398 34.9
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 1.9e-24 117.9 368 33.4
TPR.G31283 Trifolium pratense HOM05D003304 ORTHO05D003762 1.9e-24 117.9 392 36.2
Dinv44362 Davidia involucrata HOM05D003304 ORTHO05D003762 3.2e-24 117.1 158 50.0
Phvul.009G249600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 4.1e-24 116.7 385 36.1
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 5.4e-24 116.3 408 36.3
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 9.2e-24 115.5 397 37.0
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 9.2e-24 115.5 415 35.9
Prupe.1G133400 Prunus persica HOM05D003304 ORTHO05D003762 1.2e-23 115.2 171 42.7
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 2.1e-23 114.4 412 35.7
Ca_01922_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 2.7e-23 114.0 161 46.0
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 3.5e-23 113.6 414 35.3
Aqoxy3G03400 Aquilegia oxysepala HOM05D003304 ORTHO05D003762 4.6e-23 113.2 394 35.8
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 4.6e-23 113.2 259 38.2
TWI09G1044 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 7.8e-23 112.5 373 33.0
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 1.0e-22 112.1 407 36.9
Hund24887 Selenicereus undatus HOM05D003304 ORTHO05D003762 1.0e-22 112.1 372 35.8
Sed0000258 Sechium edule HOM05D003304 ORTHO05D003762 1.3e-22 111.7 396 36.1
Potri.008G220700 Populus trichocarpa HOM05D003304 ORTHO05D003762 2.3e-22 110.9 397 36.0
arahy.Tifrunner.gnm1.ann1.8XU14N Arachis hypogaea HOM05D003304 ORTHO05D003762 3.9e-22 110.2 384 34.9
Manes.03G197200 Manihot esculenta HOM05D003304 ORTHO05D003762 6.6e-22 109.4 175 44.0
Gohir.A09G238000 Gossypium hirsutum HOM05D003304 ORTHO05D003762 8.6e-22 109.0 220 45.9
Gorai.006G261600 Gossypium raimondii HOM05D003304 ORTHO05D003762 1.1e-21 108.6 224 46.0
Aa31LG5G17450 Aethionema arabicum HOM05D003304 ORTHO05D003762 1.5e-21 108.2 425 32.9
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 1.5e-21 108.2 392 37.2
Nitab4.5_0000895g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 1.9e-21 107.8 338 31.7
CDE09G0254 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 2.5e-21 107.5 374 31.0
BcaC09g47926 Brassica carinata HOM05D003304 ORTHO05D003762 5.6e-21 106.3 166 43.4
Gohir.D09G238900 Gossypium hirsutum HOM05D003304 ORTHO05D003762 5.6e-21 106.3 264 40.5
PSO357G0352 Papaver somniferum HOM05D003304 ORTHO05D003762 7.3e-21 105.9 152 49.3
arahy.Tifrunner.gnm1.ann1.IWFQ27 Arachis hypogaea HOM05D003304 ORTHO05D003762 1.2e-20 105.1 388 34.8
PSO170G6833 Papaver somniferum HOM05D003304 ORTHO05D003762 1.6e-20 104.8 152 49.3
CARHR081490 Cardamine hirsuta HOM05D003304 ORTHO05D003762 2.1e-20 104.4 265 35.5
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 2.8e-20 104.0 395 32.7
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 2.8e-20 104.0 421 31.4
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 4.7e-20 103.2 482 32.6
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 6.2e-20 102.8 395 33.4
SGA_v2.0_scaffold428G51527 Striga asiatica HOM05D003304 ORTHO05D003762 6.2e-20 102.8 389 32.6
ATR0582G207 Amborella trichopoda HOM05D003304 ORTHO05D003762 1.1e-19 102.1 243 39.5
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 1.8e-19 101.3 169 43.8
Psat4g026560 Pisum sativum HOM05D003304 ORTHO05D003762 2.3e-19 100.9 442 31.0
HPP92_024289 Vanilla planifolia HOM05D003304 ORTHO05D003762 3.1e-19 100.5 335 33.7
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 6.8e-19 99.4 274 36.1
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 6.8e-19 99.4 397 32.2
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 3.4e-18 97.1 375 32.8
Medtr4g120050 Medicago truncatula HOM05D003304 ORTHO05D003762 4.4e-18 96.7 419 34.1
THA.LOC104818917 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 4.4e-18 96.7 190 43.7
Ca_21485_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 5.8e-18 96.3 271 36.9
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 7.5e-18 95.9 403 31.0
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 9.9e-18 95.5 404 35.4
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 1.3e-17 95.1 243 38.7
unitig_32.g11868 Utricularia gibba HOM05D003304 ORTHO05D003762 1.3e-17 95.1 343 30.6
HPP92_023378 Vanilla planifolia HOM05D003304 ORTHO05D003762 1.3e-17 95.1 367 29.2
Os04g0405500 Oryza sativa ssp. japonica HOM05D003304 ORTHO05D003762 2.2e-17 94.4 168 46.4
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 3.7e-17 93.6 243 37.9
HPP92_024308 Vanilla planifolia HOM05D003304 ORTHO05D003762 3.7e-17 93.6 336 33.6
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 4.9e-17 93.2 243 37.0
TPR.G3216 Trifolium pratense HOM05D003304 ORTHO05D003762 5.4e-16 89.7 276 34.8
GSVIVG01035139001 Vitis vinifera HOM05D003304 ORTHO05D003762 9.2e-16 89.0 289 33.9
SGA_v2.0_scaffold9G04881 Striga asiatica HOM05D003304 ORTHO05D003762 3.5e-15 87.0 393 31.6
AUR62014753 Chenopodium quinoa HOM05D003304 ORTHO05D003762 6.0e-15 86.3 114 52.6
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 3.0e-14 84.0 457 30.2
CiPaw.02G081100 Carya illinoinensis HOM05D003304 ORTHO05D003762 5.1e-14 83.2 326 33.7
BcaC05g30564 Brassica carinata HOM05D003304 ORTHO05D003762 1.5e-13 81.6 388 26.8
SHI00254 Sapria himalayana HOM05D003304 ORTHO05D003762 1.5e-13 81.6 413 31.7
Zm00001eb084360 Zea mays HOM05D003304 ORTHO05D003762 4.3e-13 80.1 101 49.5
DCAR_002474 Daucus carota HOM05D003304 ORTHO05D003762 8.1e-12 75.9 263 30.0
Os02g0526700 Oryza sativa ssp. japonica HOM05D003304 ORTHO05D003762 8.1e-12 75.9 151 41.7
Zm00001eb242460 Zea mays HOM05D003304 ORTHO05D003762 1.8e-11 74.7 182 35.7
A03p34930 Brassica napus HOM05D003304 ORTHO05D003762 2.4e-11 74.3 247 31.6
AUR62016930 Chenopodium quinoa HOM05D003304 ORTHO05D003762 4.0e-11 73.6 293 30.0
BraA03t12673Z Brassica rapa HOM05D003304 ORTHO05D003762 5.2e-11 73.2 160 36.2
Nitab4.5_0004498g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.9e-09 67.4 152 34.9
C03p42510 Brassica napus HOM05D003304 ORTHO05D003762 4.9e-09 66.6 249 29.3
BolC3t16521H Brassica oleracea HOM05D003304 ORTHO05D003762 4.9e-09 66.6 249 29.3
unitig_26.g10550 Utricularia gibba HOM05D003304 ORTHO05D003762 8.4e-09 65.9 389 29.3
unitig_749.g13391 Utricularia gibba HOM05D003304 ORTHO05D003762 1.4e-08 65.1 155 34.2
Atru.chr6.1997 Acer truncatum HOM05D003304 ORTHO05D003762 1.9e-08 64.7 122 45.9
Sc08g0008170 Simmondsia chinensis HOM05D003304 ORTHO05D003762 1.6e-07 61.6 54 57.4


User provided reference genes

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