Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 7.2e-176 620.5 328 100.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.9e-99 366.7 266 71.1
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-98 364.0 266 69.5
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 7.8e-98 361.3 266 70.3
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 2.9e-92 342.8 262 66.4
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.4e-91 340.5 264 65.5
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.0e-89 334.3 265 64.9
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.3e-87 327.4 266 63.9
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 4.8e-87 325.5 264 61.0
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 5.8e-85 318.5 268 67.5
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 7.6e-85 318.2 272 59.9
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 9.9e-85 317.8 266 60.5
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.7e-84 317.0 265 62.3
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.8e-84 315.8 266 58.6
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.2e-83 312.8 268 57.5
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 5.5e-83 312.0 274 59.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.2e-82 310.8 248 60.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.2e-82 310.8 265 62.6
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.2e-82 310.8 261 60.5
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 2.7e-82 309.7 265 59.6
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.3e-81 307.4 268 59.3
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 5.1e-81 305.4 266 59.0
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 8.7e-81 304.7 249 60.2
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 8.7e-81 304.7 267 60.3
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.5e-80 303.9 258 58.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.5e-80 303.9 259 61.0
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.9e-80 303.5 252 59.5
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 4.3e-80 302.4 252 61.5
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 5.6e-80 302.0 267 59.2
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 5.6e-80 302.0 265 58.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 7.4e-80 301.6 259 58.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.3e-79 300.8 265 56.2
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.1e-79 300.1 241 61.4
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.8e-79 299.7 260 56.9
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.8e-79 299.7 260 56.9
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 6.2e-79 298.5 260 56.9
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.1e-78 297.7 271 56.1
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.1e-78 297.7 270 60.4
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.1e-78 297.7 259 59.5
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.4e-78 297.4 271 60.9
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.4e-78 297.4 273 60.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.8e-78 297.0 259 59.5
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.1e-78 296.2 270 60.4
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 4.0e-78 295.8 265 57.0
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 9.0e-78 294.7 252 60.3
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-77 294.3 259 60.6
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.2e-77 294.3 270 59.6
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.5e-77 293.9 241 60.6
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.5e-77 293.9 241 60.6
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.0e-77 293.5 269 58.7
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.4e-77 292.7 252 59.9
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 7.6e-77 291.6 243 58.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.0e-76 291.2 261 58.2
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.7e-76 290.4 252 59.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 6.5e-76 288.5 269 58.0
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 8.4e-76 288.1 240 60.4
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.1e-75 287.7 249 59.8
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.9e-75 287.0 273 59.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.9e-75 287.0 243 58.4
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.9e-75 287.0 264 55.3
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.5e-75 286.6 259 57.1
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 4.2e-75 285.8 243 58.4
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.2e-75 285.8 265 56.6
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.5e-75 285.4 263 57.0
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.5e-75 285.4 263 57.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 7.1e-75 285.0 229 62.4
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-74 284.3 267 56.6
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 2.7e-74 283.1 263 55.5
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.6e-74 282.3 267 53.6
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 4.6e-74 282.3 270 58.9
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 4.6e-74 282.3 238 58.4
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 6.0e-74 282.0 266 57.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 7.9e-74 281.6 241 60.6
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.0e-73 281.2 264 54.9
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.3e-73 280.8 264 54.5
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.8e-73 280.4 242 55.8
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 2.3e-73 280.0 253 56.5
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.3e-73 280.0 253 56.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.0e-73 279.6 267 56.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 3.9e-73 279.3 250 56.8
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 5.1e-73 278.9 243 58.8
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 6.7e-73 278.5 253 56.1
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 6.7e-73 278.5 253 56.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 8.7e-73 278.1 268 53.7
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.1e-72 277.7 273 54.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.1e-72 277.7 225 61.3
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-72 276.9 253 55.7
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.3e-72 276.2 264 54.2
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 3.3e-72 276.2 259 56.4
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 8.2e-71 271.6 264 56.8
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.1e-70 271.2 270 56.7
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.1e-70 269.6 247 59.1
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.1e-70 269.6 265 52.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 4.1e-70 269.2 239 61.5
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 5.3e-70 268.9 253 54.9
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.5e-69 267.3 253 54.5
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.4e-69 266.2 255 54.5
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.2e-68 263.5 253 54.5
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-68 263.5 273 52.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 3.8e-68 262.7 229 57.2
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 6.1e-66 255.4 274 52.2
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 7.9e-66 255.0 269 53.2
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.3e-65 254.2 207 62.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.5e-64 250.0 270 51.9
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 3.3e-64 249.6 244 54.1
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.4e-64 248.4 227 58.1
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.2e-63 246.9 241 56.0
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.4e-62 244.2 226 54.9
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 9.4e-59 231.5 252 52.8
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 2.1e-58 230.3 327 45.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 7.9e-58 228.4 266 50.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.4e-54 216.9 202 58.4
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 9.1e-54 214.9 239 51.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.6e-53 213.4 241 49.8
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.7e-53 211.8 241 49.0
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 5.0e-52 209.1 245 50.2
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.2e-51 206.1 200 55.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-50 203.4 235 48.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 9.1e-46 188.3 243 43.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.6e-45 187.6 171 54.4
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.3e-40 169.9 134 64.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.1e-38 163.3 266 42.9
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 3.5e-37 159.8 233 39.9
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.5e-37 159.5 264 43.2
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 9.4e-35 151.8 248 35.5
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.6e-34 151.0 148 54.1
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 4.7e-34 149.4 150 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 3.0e-33 146.7 244 37.3
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.2e-32 144.8 214 41.6
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.7e-32 142.5 176 45.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.7e-31 139.8 236 35.2
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 4.1e-30 136.3 140 50.0
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.9e-28 130.2 236 33.9
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.2e-27 125.6 159 49.1
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 9.5e-27 125.2 236 35.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 4.7e-26 122.9 243 33.7
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.4e-14 84.7 70 60.0
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.9e-12 76.6 77 53.2
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.3e-11 72.4 177 32.8
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.6e-10 71.2 139 33.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 4.0e-09 66.6 90 43.3
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 4.0e-09 66.6 90 43.3
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 2.9e-07 60.5 92 41.3


User provided reference genes

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