Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08076 Vaccinium macrocarpon HOM05D001171 ORTHO05D006126 5.1e-44 180.6 89 100.0
vmacro16110 Vaccinium macrocarpon HOM05D001171 ORTHO05D006126 1.8e-12 75.9 52 78.8
CiPaw.05G111400 Carya illinoinensis HOM05D001171 ORTHO05D006126 2.6e-11 72.0 66 63.6
Rhsim12G0099100 Rhododendron simsii HOM05D001171 ORTHO05D006126 7.5e-11 70.5 52 75.0
CSS0006395 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 1.3e-10 69.7 62 59.7
CSS0011449 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 1.3e-10 69.7 62 59.7
CANSAT01G1884 Cannabis sativa HOM05D001171 ORTHO05D006126 1.3e-10 69.7 89 47.2
Actinidia20704 Actinidia chinensis HOM05D001171 ORTHO05D006126 1.7e-10 69.3 62 58.1
Lalb_Chr13g0294301 Lupinus albus HOM05D001171 ORTHO05D006126 2.2e-10 68.9 66 60.6
CiPaw.06G101600 Carya illinoinensis HOM05D001171 ORTHO05D006126 3.7e-10 68.2 66 62.1
Actinidia09656 Actinidia chinensis HOM05D001171 ORTHO05D006126 4.9e-10 67.8 62 56.5
Duzib248G1370 Durio zibethinus HOM05D001171 ORTHO05D006126 4.9e-10 67.8 52 71.2
Duzib268G1390 Durio zibethinus HOM05D001171 ORTHO05D006126 4.9e-10 67.8 52 71.2
Thecc.02G210400 Theobroma cacao HOM05D001171 ORTHO05D006126 4.9e-10 67.8 52 69.2
QL03p053673 Quercus lobata HOM05D001171 ORTHO05D006126 8.3e-10 67.0 66 57.6
Lj6A825T69 Lonicera japonica HOM05D001171 ORTHO05D006126 1.1e-09 66.6 64 62.5
Lalb_Chr12g0206251 Lupinus albus HOM05D001171 ORTHO05D006126 1.1e-09 66.6 66 59.1
Cc00_g13520 Coffea canephora HOM05D001171 ORTHO05D006126 1.4e-09 66.2 52 69.2
Haze_12399 Corylus avellana HOM05D001171 ORTHO05D006126 1.8e-09 65.9 66 62.1
Haze_12401 Corylus avellana HOM05D001171 ORTHO05D006126 1.8e-09 65.9 66 62.1
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 1.8e-09 65.9 67 55.2
Cfa009328 Carpinus fangiana HOM05D001171 ORTHO05D006126 3.1e-09 65.1 66 60.6
Oeu058919.3 Olea europaea HOM05D001171 ORTHO05D006126 3.1e-09 65.1 64 59.4
Lsat_1_v5_gn_8_149401 Lactuca sativa HOM05D001171 ORTHO05D006126 4.1e-09 64.7 62 54.8
Gohir.D05G311700 Gossypium hirsutum HOM05D001171 ORTHO05D006126 5.4e-09 64.3 64 59.4
Gorai.009G332800 Gossypium raimondii HOM05D001171 ORTHO05D006126 5.4e-09 64.3 64 59.4
Glyma.05G146600 Glycine max HOM05D001171 ORTHO05D006126 7.0e-09 63.9 66 57.6
Phvul.002G174700 Phaseolus vulgaris HOM05D001171 ORTHO05D006126 7.0e-09 63.9 66 56.1
Psat7g077720 Pisum sativum HOM05D001171 ORTHO05D006126 7.0e-09 63.9 66 62.1
arahy.Tifrunner.gnm1.ann1.2F0YN9 Arachis hypogaea HOM05D001171 ORTHO05D006126 9.2e-09 63.5 64 57.8
arahy.Tifrunner.gnm1.ann1.8PLQ7K Arachis hypogaea HOM05D001171 ORTHO05D006126 9.2e-09 63.5 64 57.8
Lj3C1067G5 Lonicera japonica HOM05D001171 ORTHO05D006126 9.2e-09 63.5 62 56.5
MD13G1117700 Malus domestica HOM05D001171 ORTHO05D006126 9.2e-09 63.5 65 56.9
MD16G1117900 Malus domestica HOM05D001171 ORTHO05D006126 9.2e-09 63.5 65 58.5
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.2e-08 63.2 52 63.5
Sc11g0000480 Simmondsia chinensis HOM05D001171 ORTHO05D006126 1.2e-08 63.2 62 51.6
TWI36G0373 Tripterygium wilfordii HOM05D001171 ORTHO05D006126 1.2e-08 63.2 52 63.5
Gohir.A05G310900 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.6e-08 62.8 64 57.8
Nitab4.5_0001098g0060 Nicotiana tabacum HOM05D001171 ORTHO05D006126 1.6e-08 62.8 64 57.8
COL.COLO4_20384 Corchorus olitorius HOM05D001171 ORTHO05D006126 2.0e-08 62.4 64 59.4
Dinv10966 Davidia involucrata HOM05D001171 ORTHO05D006126 2.0e-08 62.4 64 59.4
Glyma.08G103300 Glycine max HOM05D001171 ORTHO05D006126 2.0e-08 62.4 64 57.8
Nitab4.5_0000011g0280 Nicotiana tabacum HOM05D001171 ORTHO05D006126 2.0e-08 62.4 63 58.7
MELO3C011454.2 Cucumis melo HOM05D001171 ORTHO05D006126 3.5e-08 61.6 66 54.5
Gohir.A01G160800 Gossypium hirsutum HOM05D001171 ORTHO05D006126 3.5e-08 61.6 52 67.3
ClCG08G010100 Citrullus lanatus HOM05D001171 ORTHO05D006126 4.5e-08 61.2 66 53.0
RcHm_v2.0_Chr4g0430551 Rosa chinensis HOM05D001171 ORTHO05D006126 4.5e-08 61.2 64 53.1
CsaV3_6G032260 Cucumis sativus L. HOM05D001171 ORTHO05D006126 5.9e-08 60.8 66 53.0
Peaxi162Scf00518g00436 Petunia axillaris HOM05D001171 ORTHO05D006126 5.9e-08 60.8 51 62.7
Sed0016407 Sechium edule HOM05D001171 ORTHO05D006126 5.9e-08 60.8 66 53.0
Hund06085 Selenicereus undatus HOM05D001171 ORTHO05D006126 5.9e-08 60.8 66 56.1
MSTRG.2457 Avicennia marina HOM05D001171 ORTHO05D006126 7.8e-08 60.5 53 60.4
HanXRQChr08g0207751 Helianthus annuus HOM05D001171 ORTHO05D006126 7.8e-08 60.5 62 48.4
VMungo0251G0779 Vigna mungo HOM05D001171 ORTHO05D006126 7.8e-08 60.5 66 51.5
FvH4_4g23910 Fragaria vesca HOM05D001171 ORTHO05D006126 1.0e-07 60.1 53 58.5
FAN07G0777 Fragaria x ananassa HOM05D001171 ORTHO05D006126 1.0e-07 60.1 53 58.5
Medtr8g080470 Medicago truncatula HOM05D001171 ORTHO05D006126 1.3e-07 59.7 63 58.7
Eucgr.B03486 Eucalyptus grandis HOM05D001171 ORTHO05D006126 1.7e-07 59.3 89 44.9
Gohir.A05G358801 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.7e-07 59.3 52 59.6
Atru.chr11.2309 Acer truncatum HOM05D001171 ORTHO05D006126 2.3e-07 58.9 64 54.7
FAN17G1139 Fragaria x ananassa HOM05D001171 ORTHO05D006126 2.3e-07 58.9 53 56.6
Prupe.1G227300 Prunus persica HOM05D001171 ORTHO05D006126 2.9e-07 58.5 51 60.8
EL10Ac6g13486 Beta vulgaris HOM05D001171 ORTHO05D006126 3.9e-07 58.2 75 45.3
Ca_18038_v3 Cicer arietinum L. HOM05D001171 ORTHO05D006126 3.9e-07 58.2 64 57.8
unitig_744.g24422 Utricularia gibba HOM05D001171 ORTHO05D006126 3.9e-07 58.2 64 51.6
Cpa.g.sc43.41 Carica papaya HOM05D001171 ORTHO05D006126 5.0e-07 57.8 66 54.5
Thhalv10018109m.g Eutrema salsugineum HOM05D001171 ORTHO05D006126 5.0e-07 57.8 52 59.6
Lj4g0002448 Lotus japonicus HOM05D001171 ORTHO05D006126 6.6e-07 57.4 60 53.3
AUR62005606 Chenopodium quinoa HOM05D001171 ORTHO05D006126 8.6e-07 57.0 52 57.7
Nn3g16495 Nelumbo nucifera HOM05D001171 ORTHO05D006126 8.6e-07 57.0 52 57.7
PGR102G0186 Punica granatum HOM05D001171 ORTHO05D006126 8.6e-07 57.0 53 56.6
Solyc12g035490.1 Solanum lycopersicum HOM05D001171 ORTHO05D006126 8.6e-07 57.0 52 57.7
Sopen12g015420 Solanum pennellii HOM05D001171 ORTHO05D006126 8.6e-07 57.0 52 57.7
AT1G67420 Arabidopsis thaliana HOM05D001171 ORTHO05D006126 1.9e-06 55.8 52 55.8
CAN.G828.1 Capsicum annuum HOM05D001171 ORTHO05D006126 1.9e-06 55.8 52 57.7
AUR62024123 Chenopodium quinoa HOM05D001171 ORTHO05D006126 1.9e-06 55.8 52 55.8
TPR.G17090 Trifolium pratense HOM05D001171 ORTHO05D006126 1.9e-06 55.8 64 53.1
GSVIVG01010452001 Vitis vinifera HOM05D001171 ORTHO05D006126 1.9e-06 55.8 53 54.7
SalBow8G5464 Salvia bowleyana HOM05D001171 ORTHO05D006126 2.5e-06 55.5 62 46.8
TAR622G0378 Trochodendron aralioides HOM05D001171 ORTHO05D006126 2.5e-06 55.5 65 53.8
SGA_v2.0_scaffold87G27147 Striga asiatica HOM05D001171 ORTHO05D006126 3.3e-06 55.1 50 56.0
A07p33970 Brassica napus HOM05D001171 ORTHO05D006126 4.3e-06 54.7 52 57.7
BraA07t31024Z Brassica rapa HOM05D001171 ORTHO05D006126 7.3e-06 53.9 52 57.7
SHI17957 Sapria himalayana HOM05D001171 ORTHO05D006126 9.5e-06 53.5 44 68.2


User provided reference genes

Program Settings