Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.9e-232 808.9 429 100.0
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.7e-89 332.0 316 59.2
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.7e-87 326.2 316 58.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 4.6e-82 309.3 311 55.3
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 7.9e-82 308.5 336 55.4
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 8.7e-81 305.1 310 55.5
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 8.7e-81 305.1 308 55.2
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.4e-78 297.7 310 53.9
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.4e-78 297.0 309 53.7
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.4e-78 297.0 308 53.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 4.0e-78 296.2 316 54.7
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 4.0e-78 296.2 341 52.2
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 6.9e-78 295.4 308 52.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 9.0e-78 295.0 308 52.6
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.2e-77 294.7 310 54.5
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.4e-77 293.1 308 52.6
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 3.4e-77 293.1 308 52.3
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 5.8e-77 292.4 311 52.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 5.8e-77 292.4 308 51.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.6e-77 292.0 310 53.2
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 7.6e-77 292.0 308 51.9
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.0e-76 291.6 316 53.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-76 290.0 308 52.3
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-76 290.0 308 52.3
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 5.0e-76 289.3 311 52.7
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 6.5e-76 288.9 311 54.0
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 6.5e-76 288.9 308 52.9
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.1e-75 288.1 308 51.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-75 288.1 369 48.0
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-75 287.7 308 51.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-75 287.3 308 52.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.9e-75 287.3 311 52.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.5e-75 287.0 308 51.6
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.5e-75 287.0 310 53.5
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.5e-75 287.0 310 50.0
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.2e-75 286.6 308 51.6
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 4.2e-75 286.2 310 52.6
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 5.5e-75 285.8 308 51.9
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 5.5e-75 285.8 308 51.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 7.1e-75 285.4 309 50.5
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-74 284.6 308 52.3
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.6e-74 284.3 308 52.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.5e-74 283.1 308 51.9
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.5e-74 283.1 311 52.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.1e-74 282.3 308 51.6
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 7.9e-74 282.0 313 51.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.0e-73 281.6 297 52.9
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.0e-73 281.6 310 52.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.8e-73 280.8 308 50.3
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 5.1e-73 279.3 307 51.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 6.7e-73 278.9 308 51.3
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.7e-73 278.9 319 51.1
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 8.7e-73 278.5 311 51.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 8.7e-73 278.5 314 50.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-72 277.7 308 51.0
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.5e-72 277.7 310 50.3
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.9e-72 277.3 308 50.6
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-72 277.3 308 50.3
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-72 277.3 308 50.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 4.3e-72 276.2 308 50.3
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.3e-72 276.2 297 51.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 4.3e-72 276.2 309 51.1
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 5.7e-72 275.8 316 47.2
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 7.4e-72 275.4 299 51.5
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 9.7e-72 275.0 308 50.3
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.3e-71 274.6 308 50.3
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 1.6e-71 274.2 308 49.0
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.8e-71 273.5 308 49.4
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.8e-71 273.5 310 51.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.8e-71 273.5 308 50.0
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 3.7e-71 273.1 308 51.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.8e-71 272.7 313 48.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.8e-71 272.7 308 49.7
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 6.3e-71 272.3 308 50.0
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 6.3e-71 272.3 308 49.7
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.3e-71 272.3 313 48.9
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 6.3e-71 272.3 308 49.7
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.2e-71 271.9 317 48.9
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.2e-71 271.9 317 48.9
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 8.2e-71 271.9 308 50.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.1e-70 271.6 308 48.1
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-70 271.2 310 50.3
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.4e-70 270.4 308 49.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.4e-70 270.4 310 49.4
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.4e-70 270.4 316 45.9
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 4.1e-70 269.6 308 49.0
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 6.9e-70 268.9 308 49.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 6.9e-70 268.9 308 49.4
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.9e-70 268.9 305 47.5
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.9e-70 268.9 310 49.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 9.0e-70 268.5 308 49.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 9.0e-70 268.5 308 48.7
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-69 268.1 268 54.9
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-69 267.7 310 50.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.5e-69 267.7 261 55.6
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.0e-69 267.3 308 49.7
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.0e-69 267.3 309 49.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.6e-69 266.9 268 54.9
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.4e-69 266.5 316 45.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.9e-69 265.8 308 50.0
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 5.9e-69 265.8 312 49.7
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.9e-69 265.8 316 45.6
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 5.9e-69 265.8 316 45.6
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.0e-68 265.0 294 47.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.3e-68 264.6 311 49.5
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.2e-68 263.8 271 52.4
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 2.2e-68 263.8 308 48.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-67 261.2 310 47.4
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.9e-67 260.8 273 53.1
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.2e-67 259.6 310 47.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 4.2e-67 259.6 310 47.1
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 5.1e-65 252.7 308 48.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-63 248.1 308 46.1
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.8e-62 244.2 308 47.4
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 3.1e-62 243.4 308 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.9e-61 239.2 260 50.4
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.2e-60 237.3 260 50.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 5.0e-60 236.1 308 43.8
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-59 235.0 309 43.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.2e-59 233.0 292 45.9
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 6.1e-58 229.2 308 42.9
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.4e-54 218.0 314 43.0
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-53 214.5 223 53.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 3.5e-53 213.4 223 53.4
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.7e-52 211.1 269 46.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 5.5e-51 206.1 222 51.8
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 8.8e-49 198.7 119 83.2
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.4e-48 196.4 266 46.6
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 7.4e-48 195.7 222 50.5
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-45 188.3 107 86.0
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 4.2e-43 179.9 107 80.4
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 4.2e-43 179.9 107 80.4
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.0e-40 171.0 100 80.0
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.3e-39 168.3 261 41.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 9.1e-38 162.2 201 46.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-37 161.4 95 81.1
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.2e-36 157.5 257 38.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 7.2e-35 152.5 226 41.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 5.2e-33 146.4 133 57.1
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.5e-32 144.8 135 54.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 4.4e-32 143.3 308 32.5
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 4.5e-29 133.3 89 70.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.3e-27 127.1 130 52.3
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 5.5e-27 126.3 130 49.2
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.2e-24 118.6 314 27.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 8.3e-23 112.5 130 45.4
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 7.3e-19 99.4 119 45.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-14 85.5 130 40.8
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.6e-13 81.6 59 66.1
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.6e-10 71.6 152 34.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 6.2e-10 69.7 46 69.6
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.3e-07 62.0 47 63.8
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 5.4e-06 56.6 41 63.4


User provided reference genes

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