Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 0.0e+00 1700.3 866 100.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.8e-271 939.5 706 72.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.5e-244 849.4 692 67.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.3e-240 837.0 703 66.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.7e-240 835.5 703 66.4
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.3e-234 816.2 691 66.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.9e-207 726.9 727 56.3
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 3.1e-194 682.9 695 56.3
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.2e-179 633.6 723 52.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.2e-171 607.1 688 50.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 6.1e-166 589.0 695 49.6
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 8.0e-166 588.6 693 50.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.3e-165 587.0 692 49.9
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.5e-164 584.3 711 48.9
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.7e-163 580.9 714 48.3
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.6e-161 574.3 702 49.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.9e-159 567.4 725 48.1
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.2e-157 559.3 701 47.5
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.2e-156 558.1 701 47.5
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.5e-156 557.8 701 47.1
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.6e-156 557.0 729 47.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.6e-156 557.0 703 47.4
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.3e-155 554.7 668 49.7
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 5.4e-154 549.3 712 46.8
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 5.4e-154 549.3 697 45.8
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.0e-154 548.9 708 46.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.6e-153 547.7 699 47.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.9e-153 545.8 712 46.3
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.3e-152 543.9 715 45.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.3e-152 543.9 704 46.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 6.5e-152 542.3 723 46.1
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.3e-151 540.0 701 46.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.2e-151 538.9 708 47.3
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 7.5e-148 528.9 705 46.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 7.5e-148 528.9 690 46.8
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-146 524.6 707 45.0
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.1e-146 523.1 712 45.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.7e-145 520.4 711 45.4
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 8.6e-144 515.4 710 45.1
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-143 515.0 770 43.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 5.6e-143 512.7 699 44.9
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 4.7e-142 509.6 714 43.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.8e-141 505.8 707 44.7
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 7.0e-138 495.7 720 44.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 3.5e-137 493.4 702 44.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-136 491.9 615 47.0
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.1e-135 488.4 703 43.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.9e-135 487.6 684 46.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.6e-134 484.6 733 43.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.7e-131 474.6 597 46.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.7e-131 473.4 705 43.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 8.3e-131 472.2 725 42.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.4e-130 471.5 703 43.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.2e-130 470.3 745 41.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.6e-129 466.5 703 42.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.6e-129 466.5 686 42.6
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.3e-128 464.9 693 42.4
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.7e-128 464.5 686 42.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.9e-128 463.4 735 41.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.0e-128 463.0 735 43.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 6.6e-128 462.6 696 42.5
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.5e-127 461.5 705 42.3
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 9.5e-127 458.8 707 42.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-126 458.4 707 42.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.2e-126 458.4 712 41.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.6e-126 456.8 712 40.4
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.1e-125 455.3 732 41.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-125 454.9 703 41.3
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-125 454.1 702 41.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 6.8e-125 452.6 697 40.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.9e-125 452.2 730 42.5
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.4e-124 450.3 725 41.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.9e-124 448.7 540 48.7
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.9e-123 447.2 695 41.9
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 7.1e-122 442.6 706 41.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.1e-121 441.0 686 43.9
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.8e-121 439.1 710 41.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 7.8e-121 439.1 706 40.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.8e-121 439.1 702 39.6
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 7.8e-121 439.1 691 43.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.1e-119 435.3 622 43.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 2.5e-119 434.1 688 44.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-118 431.0 588 45.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.2e-118 429.5 660 43.2
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.1e-117 427.2 662 40.3
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 5.8e-116 422.9 701 38.7
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.8e-115 420.2 702 40.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 9.2e-114 415.6 703 40.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.1e-112 409.8 707 40.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.7e-110 403.3 685 39.9
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.2e-106 390.2 590 42.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.2e-105 388.7 715 38.5
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.6e-104 382.9 487 46.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 9.6e-103 379.0 713 37.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.6e-102 377.1 513 44.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.8e-94 350.9 520 41.9
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-92 345.5 532 42.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.9e-91 340.9 705 36.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-90 339.0 506 45.1
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-88 331.3 724 36.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.2e-86 322.8 477 42.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.1e-85 320.9 571 39.4
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.2e-84 318.9 669 35.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.3e-83 315.5 586 36.9
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-82 312.4 492 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 9.7e-79 299.3 741 32.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.8e-78 297.0 717 34.9
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.1e-77 294.3 527 38.1
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.1e-77 293.9 766 32.9
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.4e-76 290.8 470 41.3
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 5.0e-75 287.0 685 32.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.6e-73 282.0 621 33.5
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.4e-72 278.9 370 45.7
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.0e-72 277.7 686 32.5
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.0e-72 277.7 686 32.5
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.7e-70 270.8 491 38.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-68 265.8 583 33.4
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.7e-68 263.1 489 37.0
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.9e-67 261.2 366 41.8
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.5e-66 258.1 408 41.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.2e-58 229.9 681 31.6
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.1e-57 226.9 454 35.0
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-53 216.1 244 51.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.5e-42 178.3 224 47.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.2e-42 177.9 227 44.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.6e-39 168.3 323 37.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.8e-39 166.4 259 42.9
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.2e-38 165.2 323 36.2
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.7e-38 164.5 231 46.8
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.3e-38 163.3 259 41.3
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.4e-37 162.5 260 44.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.5e-36 157.5 468 29.9
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.5e-34 151.8 393 31.6
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-32 146.4 391 30.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.0e-32 144.4 160 46.9
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.2e-32 144.1 212 39.2
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.4e-31 141.0 440 30.9
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.7e-31 140.6 343 32.9
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-30 139.0 323 33.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-30 138.7 359 34.3
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-24 119.4 219 37.9
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.4e-24 119.4 211 41.2
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.2e-23 116.3 358 32.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.3e-22 110.2 106 56.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-21 109.8 616 25.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.2e-20 106.3 115 52.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.3e-19 102.8 123 43.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.9e-19 101.3 164 42.1
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.5e-18 99.4 86 57.0
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.6e-17 94.7 80 56.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 8.0e-17 93.6 133 42.1
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.8e-16 92.4 225 33.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.8e-16 90.5 152 42.8
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.4e-15 88.2 78 59.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-14 86.3 128 42.2
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.9e-14 85.1 62 59.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.9e-14 84.3 104 46.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.2e-13 80.1 103 47.6
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 8.6e-11 73.6 392 24.5
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.3e-10 71.2 101 42.6
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 2.1e-09 68.9 83 45.8
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.8e-09 68.6 433 23.8
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.1e-08 66.6 148 34.5
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.0e-07 62.4 130 30.8


User provided reference genes

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