Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 4.3e-230 801.2 475 100.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.9e-109 399.8 532 53.4
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.1e-108 397.9 341 68.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.4e-95 354.4 501 49.7
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.9e-92 344.0 515 45.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.6e-89 332.4 515 44.1
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 5.1e-82 309.3 541 41.6
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.3e-81 306.2 538 41.4
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.6e-80 304.3 524 42.0
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 4.8e-80 302.8 516 42.8
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 6.3e-80 302.4 543 41.8
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.8e-79 300.8 458 45.6
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.1e-79 300.1 518 41.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 5.3e-79 299.3 541 40.5
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.5e-78 297.7 456 43.9
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 5.0e-77 292.7 453 43.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.5e-77 292.4 536 42.7
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.1e-76 291.6 512 41.8
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-76 291.2 532 41.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 4.2e-76 289.7 539 39.7
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 9.3e-76 288.5 423 46.8
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.1e-75 287.3 520 41.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 4.6e-75 286.2 548 42.3
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-74 284.6 392 47.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-74 283.5 533 39.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 3.0e-74 283.5 394 47.7
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 8.8e-74 282.0 510 40.4
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.5e-73 281.2 511 41.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.7e-73 279.3 552 38.6
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 9.7e-73 278.5 538 42.6
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.7e-73 278.5 533 41.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.7e-73 278.5 533 40.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 3.7e-72 276.6 541 38.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 6.3e-72 275.8 521 41.5
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.4e-71 273.9 541 42.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.4e-71 273.9 559 42.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.2e-70 271.6 499 41.5
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.9e-70 269.2 532 38.2
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.9e-70 269.2 454 43.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.0e-69 268.5 557 39.0
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.9e-69 266.9 532 38.0
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.0e-69 266.2 514 38.7
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.1e-68 265.0 577 40.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.2e-68 263.5 468 42.5
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 7.2e-68 262.3 515 39.6
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.6e-67 261.2 456 40.8
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.7e-67 260.4 548 38.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.1e-67 259.2 554 36.8
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.4e-66 258.1 426 45.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.5e-65 254.6 509 35.2
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.0e-65 254.2 541 40.3
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.6e-65 253.8 364 48.1
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 9.7e-65 251.9 502 36.5
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-64 251.5 557 40.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.8e-64 250.4 516 38.2
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 3.7e-64 250.0 530 36.2
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.8e-64 249.6 370 45.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.1e-63 248.4 518 37.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.8e-63 247.7 507 36.3
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.8e-63 247.7 521 37.2
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.1e-63 245.4 553 39.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.6e-62 243.8 538 42.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.5e-62 243.0 432 40.0
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.0e-61 241.9 504 36.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.8e-61 240.0 366 42.3
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.8e-61 240.0 360 43.9
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.5e-61 238.8 450 38.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.9e-60 237.7 553 37.6
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.1e-59 234.2 454 38.5
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.8e-58 231.1 517 33.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.9e-58 229.9 362 43.1
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.2e-58 229.6 507 39.8
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-57 228.4 511 35.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 4.4e-57 226.5 499 35.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.7e-56 224.6 514 36.4
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.7e-56 224.6 506 39.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.8e-56 223.0 506 39.5
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 4.1e-55 219.9 515 33.2
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 9.1e-55 218.8 442 37.6
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.2e-54 218.4 443 36.8
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.6e-54 217.2 513 34.3
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.5e-54 216.9 452 38.5
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.5e-54 216.9 404 37.9
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.0e-53 215.3 438 37.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.3e-53 214.9 520 33.8
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.3e-53 214.9 456 37.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.8e-53 213.4 362 42.3
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 8.5e-53 212.2 532 34.2
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.1e-52 211.8 431 37.8
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.9e-52 211.1 375 42.7
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 3.2e-52 210.3 448 37.1
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 4.2e-52 209.9 424 37.3
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 5.5e-52 209.5 435 37.5
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.7e-51 207.2 429 37.8
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.6e-51 206.8 359 39.0
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 4.7e-51 206.5 523 33.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 6.1e-51 206.1 453 36.6
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 6.1e-51 206.1 473 39.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.0e-50 205.3 450 35.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.2e-50 203.0 376 39.9
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.6e-49 200.7 436 35.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.7e-48 198.0 371 40.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.8e-48 196.4 170 65.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-46 191.4 504 31.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.5e-46 190.3 351 37.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.3e-45 188.3 511 31.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.3e-45 188.3 301 42.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.7e-45 188.0 520 31.3
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.8e-45 186.8 371 38.3
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.0e-45 186.4 431 35.3
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.0e-45 186.4 408 34.8
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.5e-45 186.0 356 37.6
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-44 184.9 513 33.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-44 184.9 513 33.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.5e-44 184.9 513 33.3
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.2e-44 183.7 548 32.1
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.5e-44 183.0 512 32.6
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.1e-43 181.0 395 34.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-43 180.3 511 30.5
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.6e-43 180.3 511 30.5
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-43 179.9 413 33.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 6.1e-43 179.5 339 38.3
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.2e-41 175.3 504 32.9
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 5.7e-41 172.9 453 32.7
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 5.7e-41 172.9 453 32.7
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 5.7e-41 172.9 453 32.7
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.2e-40 171.0 416 34.4
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.8e-40 169.9 364 34.3
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-39 166.4 366 35.8
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 4.5e-38 163.3 307 39.7
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.3e-37 161.8 356 34.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.9e-36 157.9 338 36.7
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 4.2e-36 156.8 333 35.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.8e-34 151.4 159 59.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.0e-29 135.6 327 34.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 8.0e-27 125.9 166 49.4
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.0e-26 125.6 306 33.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.8e-26 122.9 372 28.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.8e-26 122.9 366 29.5
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-22 110.9 521 25.7
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-22 110.9 521 25.7
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 3.5e-22 110.5 464 27.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 6.4e-16 89.7 105 47.6
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.6e-14 85.1 123 44.7
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.1e-14 84.7 123 43.9
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-13 80.9 405 25.2
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.3e-12 77.4 371 24.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 4.3e-12 77.0 140 39.3
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.6e-11 75.1 144 32.6
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-11 74.7 87 42.5
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.7e-11 73.6 129 36.4
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-09 67.0 329 22.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 7.5e-09 66.2 171 29.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-08 65.1 148 33.1
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.2e-08 64.7 84 41.7
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.9e-08 64.3 149 28.2
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-08 63.5 55 54.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.4e-07 60.1 280 23.9


User provided reference genes

Program Settings