Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 0.0e+00 1125.5 575 100.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.6e-308 1062.0 571 94.0
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.3e-296 1019.6 571 91.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.6e-285 983.0 584 85.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.4e-283 979.2 575 86.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.6e-274 948.3 571 84.8
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.9e-272 942.2 583 83.0
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.5e-272 940.6 568 83.5
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.7e-271 938.3 577 82.7
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.0e-270 936.4 573 82.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.9e-270 934.5 570 83.0
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.1e-270 934.1 584 82.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 8.8e-270 933.3 576 82.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.1e-269 932.9 583 82.3
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.5e-269 931.8 606 79.5
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 7.4e-269 930.2 559 83.7
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 9.7e-269 929.9 555 84.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 8.2e-268 926.8 572 81.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.1e-267 924.9 582 81.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.3e-267 924.1 582 81.4
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 9.1e-267 923.3 583 79.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.5e-266 921.0 573 81.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.7e-265 919.1 532 86.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 5.0e-265 917.5 560 82.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 8.5e-265 916.8 560 82.5
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 8.5e-265 916.8 574 80.7
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.9e-264 915.6 574 80.7
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-264 914.4 580 81.2
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.1e-263 912.1 571 80.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.7e-263 911.8 519 86.5
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.7e-263 911.8 565 81.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 4.7e-263 911.0 549 82.1
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 6.1e-263 910.6 572 80.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.1e-263 910.6 573 80.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 6.1e-263 910.6 568 80.8
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.0e-262 909.8 560 83.2
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.4e-262 909.4 581 79.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.3e-262 908.7 576 79.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.0e-262 908.3 559 82.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 8.8e-262 906.7 581 79.2
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 5.7e-261 904.0 564 80.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.2e-260 902.1 598 76.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.8e-260 901.0 565 80.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 8.2e-260 900.2 562 79.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 8.2e-260 900.2 567 79.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.4e-259 899.4 552 81.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 9.1e-259 896.7 562 79.2
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.0e-258 895.6 573 79.9
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.6e-258 895.2 568 80.1
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.5e-258 894.8 575 78.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.5e-258 894.8 577 79.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.3e-257 892.9 528 84.8
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.7e-257 892.5 569 78.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.8e-257 891.3 566 78.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 3.8e-257 891.3 515 85.2
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 8.5e-257 890.2 537 82.5
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.1e-256 889.8 566 80.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-256 889.4 560 80.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.5e-256 889.4 551 80.4
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.5e-256 889.4 575 78.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.9e-256 889.0 515 84.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.9e-256 889.0 526 83.8
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 3.2e-256 888.3 565 80.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.6e-255 885.9 563 80.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.6e-255 885.9 563 80.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.6e-255 885.9 563 80.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.6e-255 884.8 577 78.7
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 4.7e-255 884.4 535 81.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 6.1e-255 884.0 577 77.6
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 6.1e-255 884.0 563 79.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 6.1e-255 884.0 563 79.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 6.1e-255 884.0 574 78.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.0e-254 883.2 565 79.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.4e-254 882.9 554 80.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-254 882.5 581 78.5
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.8e-254 882.5 563 78.2
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-254 882.1 581 77.1
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-254 881.7 545 81.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 3.0e-254 881.7 565 79.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.9e-254 881.3 578 77.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 6.7e-254 880.6 566 79.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 6.7e-254 880.6 558 79.4
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 8.8e-254 880.2 566 79.0
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.4e-253 877.9 561 79.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.7e-252 875.9 555 79.8
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.2e-252 873.6 576 77.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 5.9e-250 867.5 569 77.0
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.2e-249 865.5 538 80.1
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.1e-248 863.2 495 87.9
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.1e-248 863.2 566 78.1
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.2e-247 859.8 601 74.2
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.6e-247 859.4 545 79.4
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.6e-247 858.2 527 80.1
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 3.0e-246 855.1 549 78.5
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.8e-246 854.0 561 77.5
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.5e-240 836.3 529 79.2
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.7e-239 832.0 559 75.7
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 8.0e-239 830.5 568 76.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 4.4e-237 824.7 558 74.9
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.7e-236 821.6 473 86.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.4e-235 819.7 565 74.3
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 7.7e-234 813.9 465 86.7
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.5e-232 809.7 573 73.6
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.8e-230 800.8 488 82.4
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.7e-225 786.2 548 71.7
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.9e-225 785.0 520 76.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-218 763.1 513 72.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.7e-217 759.6 514 72.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.8e-214 749.6 540 72.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.3e-214 749.2 555 67.4
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 6.4e-212 741.1 452 80.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.4e-211 740.0 441 81.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.5e-205 719.9 576 68.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.7e-204 715.3 405 88.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 5.4e-203 711.4 528 69.9
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.8e-198 696.4 531 66.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.6e-197 692.6 573 66.0
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.7e-193 679.9 559 63.9
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.7e-188 663.3 464 71.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.9e-187 659.8 577 63.6
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 9.6e-184 647.5 522 64.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 2.1e-183 646.4 489 63.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.8e-167 592.0 508 63.4
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 6.2e-167 591.7 318 90.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-166 590.1 527 60.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 7.4e-160 568.2 516 59.3
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.4e-158 563.9 346 84.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.4e-157 559.3 467 61.2
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.2e-155 552.4 503 59.4
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 7.2e-155 551.6 504 59.3
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.4e-155 551.2 504 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.3e-136 489.6 331 72.2
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.4e-131 471.5 501 53.1
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.1e-122 442.2 500 46.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.6e-120 436.8 602 46.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 9.2e-102 375.2 531 39.5
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-96 355.9 428 49.3
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-89 332.4 346 55.5
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.4e-88 330.1 449 40.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.8e-73 281.2 555 38.6
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.4e-72 276.9 185 70.3
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-70 271.6 167 83.2
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.3e-59 233.8 256 51.2
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-53 214.9 413 37.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-52 211.1 504 34.7
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.4e-48 197.2 129 76.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-43 181.8 105 80.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.2e-40 172.2 106 85.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-39 167.2 118 76.3
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.8e-36 156.0 140 57.9
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-31 141.4 80 83.8
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.2e-31 141.4 97 80.4
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.3e-27 127.5 77 84.4
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.5e-22 111.3 65 86.2
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 5.2e-20 103.6 71 74.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 5.2e-20 103.6 91 59.3
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-19 102.1 84 52.4
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 5.9e-16 90.1 50 88.0
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-15 88.2 54 81.5
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 3.2e-14 84.3 56 75.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.6e-13 80.9 69 66.7
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.0e-12 79.3 53 73.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.0e-12 77.4 98 48.0
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 2.6e-11 74.7 43 81.4
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 9.1e-09 66.2 158 38.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.5e-08 64.3 55 56.4
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 1.0e-07 62.8 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.1e-06 59.3 50 60.0
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.5e-06 58.2 44 59.1


User provided reference genes

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