Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07610 Vaccinium macrocarpon HOM05D000414 ORTHO05D000276 4.4e-42 174.1 81 100.0
RhsimUnG0114100 Rhododendron simsii HOM05D000414 ORTHO05D000276 2.4e-24 115.2 58 91.4
Actinidia37846 Actinidia chinensis HOM05D000414 ORTHO05D000276 9.2e-24 113.2 58 89.7
RhsimUnG0022300 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.6e-23 112.5 58 89.7
Dinv37049 Davidia involucrata HOM05D000414 ORTHO05D000276 1.0e-22 109.8 56 87.5
Hma1.2p1_0233F.1_g098130 Hydrangea macrophylla HOM05D000414 ORTHO05D000276 1.7e-22 109.0 56 89.3
CiPaw.09G052600 Carya illinoinensis HOM05D000414 ORTHO05D000276 5.6e-21 104.0 56 83.9
QL07p015601 Quercus lobata HOM05D000414 ORTHO05D000276 5.6e-21 104.0 56 83.9
Ciclev10012860m.g Citrus clementina HOM05D000414 ORTHO05D000276 1.2e-20 102.8 65 72.3
Duzib114G0401 Durio zibethinus HOM05D000414 ORTHO05D000276 1.2e-20 102.8 56 78.6
Potri.006G024900 Populus trichocarpa HOM05D000414 ORTHO05D000276 1.6e-20 102.4 57 80.7
Atru.chr8.934 Acer truncatum HOM05D000414 ORTHO05D000276 6.2e-20 100.5 56 78.6
CAN.G128.138 Capsicum annuum HOM05D000414 ORTHO05D000276 6.2e-20 100.5 64 73.4
DCAR_013507 Daucus carota HOM05D000414 ORTHO05D000276 6.2e-20 100.5 57 80.7
Peaxi162Scf00575g00046 Petunia axillaris HOM05D000414 ORTHO05D000276 8.0e-20 100.1 64 73.4
Solyc10g081410.2 Solanum lycopersicum HOM05D000414 ORTHO05D000276 1.1e-19 99.8 63 74.6
Sopen10g031910 Solanum pennellii HOM05D000414 ORTHO05D000276 1.1e-19 99.8 63 74.6
PGSC0003DMG400028123 Solanum tuberosum HOM05D000414 ORTHO05D000276 1.1e-19 99.8 63 74.6
Nitab4.5_0000613g0120 Nicotiana tabacum HOM05D000414 ORTHO05D000276 1.4e-19 99.4 66 71.2
Nitab4.5_0004148g0010 Nicotiana tabacum HOM05D000414 ORTHO05D000276 1.8e-19 99.0 63 74.6
PGR142G2279 Punica granatum HOM05D000414 ORTHO05D000276 1.8e-19 99.0 63 71.4
Haze_20363 Corylus avellana HOM05D000414 ORTHO05D000276 2.3e-19 98.6 56 80.4
Eucgr.K01555 Eucalyptus grandis HOM05D000414 ORTHO05D000276 2.3e-19 98.6 54 79.6
Gohir.A05G405200 Gossypium hirsutum HOM05D000414 ORTHO05D000276 4.0e-19 97.8 55 78.2
Gohir.D04G010400 Gossypium hirsutum HOM05D000414 ORTHO05D000276 4.0e-19 97.8 55 78.2
Gorai.012G012300 Gossypium raimondii HOM05D000414 ORTHO05D000276 4.0e-19 97.8 55 78.2
BcaC02g12862 Brassica carinata HOM05D000414 ORTHO05D000276 5.2e-19 97.4 56 76.8
Cpa.g.sc92.67 Carica papaya HOM05D000414 ORTHO05D000276 5.2e-19 97.4 56 76.8
arahy.Tifrunner.gnm1.ann1.8009T9 Arachis hypogaea HOM05D000414 ORTHO05D000276 6.8e-19 97.1 56 76.8
arahy.Tifrunner.gnm1.ann1.MDR1WT Arachis hypogaea HOM05D000414 ORTHO05D000276 6.8e-19 97.1 56 76.8
Medtr5g008240 Medicago truncatula HOM05D000414 ORTHO05D000276 6.8e-19 97.1 66 66.7
Prupe.7G024900 Prunus persica HOM05D000414 ORTHO05D000276 6.8e-19 97.1 62 72.6
Sabra06G0018400 Salix brachista HOM05D002466 ORTHO05D000276 6.8e-19 97.1 53 81.1
Thhalv10017276m.g Eutrema salsugineum HOM05D000414 ORTHO05D000276 8.9e-19 96.7 56 75.0
SGA_v2.0_scaffold66G22352 Striga asiatica HOM05D000414 ORTHO05D000276 1.2e-18 96.3 66 68.2
THA.LOC104803233 Tarenaya hassleriana HOM05D000414 ORTHO05D000276 1.2e-18 96.3 57 71.9
Thecc.10G189000 Theobroma cacao HOM05D000414 ORTHO05D000276 1.2e-18 96.3 55 76.4
SGA_v2.0_scaffold66G22366 Striga asiatica HOM05D000414 ORTHO05D000276 1.5e-18 95.9 66 68.2
Oeu044214.2 Olea europaea HOM05D000414 ORTHO05D000276 4.4e-18 94.4 59 76.3
RcHm_v2.0_Chr3g0495251 Rosa chinensis HOM05D000414 ORTHO05D000276 4.4e-18 94.4 53 77.4
Sp4g23260 Schrenkiella parvula HOM05D000414 ORTHO05D000276 4.4e-18 94.4 70 64.3
GSVIVG01025863001 Vitis vinifera HOM05D000414 ORTHO05D000276 5.8e-18 94.0 56 78.6
Ah.09g232150 Amaranthus hybridus HOM05D000414 ORTHO05D000276 7.5e-18 93.6 53 75.5
BraA04t18586Z Brassica rapa HOM05D000414 ORTHO05D000276 7.5e-18 93.6 56 73.2
Cc06_g21070 Coffea canephora HOM05D000414 ORTHO05D000276 7.5e-18 93.6 61 70.5
COL.COLO4_19506 Corchorus olitorius HOM05D000414 ORTHO05D000276 7.5e-18 93.6 53 79.2
AL4G38900 Arabidopsis lyrata HOM05D000414 ORTHO05D000276 9.8e-18 93.2 56 75.0
MD12G1015600 Malus domestica HOM05D000414 ORTHO05D000276 9.8e-18 93.2 53 81.1
Migut.J01600 Erythranthe guttata HOM05D000414 ORTHO05D000276 1.3e-17 92.8 56 76.8
Sc14g0003170 Simmondsia chinensis HOM05D000414 ORTHO05D000276 1.3e-17 92.8 62 69.4
TWI77G0978 Tripterygium wilfordii HOM05D000414 ORTHO05D000276 1.3e-17 92.8 53 75.5
Phvul.002G036700 Phaseolus vulgaris HOM05D000414 ORTHO05D000276 2.2e-17 92.0 56 75.0
PSO339G0952 Papaver somniferum HOM05D000414 ORTHO05D000276 2.9e-17 91.7 57 71.9
VMungo1215G0767 Vigna mungo HOM05D000414 ORTHO05D000276 2.9e-17 91.7 56 73.2
MSTRG.6257 Avicennia marina HOM05D000414 ORTHO05D000276 3.7e-17 91.3 65 69.2
CARHR136050 Cardamine hirsuta HOM05D000414 ORTHO05D000276 3.7e-17 91.3 56 71.4
FvH4_5g33900 Fragaria vesca HOM05D000414 ORTHO05D000276 3.7e-17 91.3 55 72.7
FAN08G2981 Fragaria x ananassa HOM05D000414 ORTHO05D000276 3.7e-17 91.3 55 72.7
TAR633G1168 Trochodendron aralioides HOM05D000414 ORTHO05D000276 3.7e-17 91.3 54 74.1
C04p68690 Brassica napus HOM05D000414 ORTHO05D000276 6.4e-17 90.5 56 71.4
BolC4t28374H Brassica oleracea HOM05D000414 ORTHO05D000276 6.4e-17 90.5 56 71.4
AUR62031306 Chenopodium quinoa HOM05D000414 ORTHO05D000276 6.4e-17 90.5 53 71.7
Nn7g37300 Nelumbo nucifera HOM05D000414 ORTHO05D000276 6.4e-17 90.5 56 71.4
LjContig00222g0008798 Lotus japonicus HOM05D000414 ORTHO05D000276 1.1e-16 89.7 65 66.2
AT2G40935 Arabidopsis thaliana HOM05D000414 ORTHO05D000276 1.9e-16 89.0 56 71.4
Carub.0004s2324 Capsella rubella HOM05D000414 ORTHO05D000276 1.9e-16 89.0 56 69.6
Manes.07G076100 Manihot esculenta HOM05D000414 ORTHO05D000276 1.9e-16 89.0 54 74.1
TPR.G37962 Trifolium pratense HOM05D000414 ORTHO05D000276 2.4e-16 88.6 56 71.4
Glyma.11G013300 Glycine max HOM05D000414 ORTHO05D000276 3.2e-16 88.2 56 73.2
FAN18G2105 Fragaria x ananassa HOM05D000414 ORTHO05D000276 4.1e-16 87.8 53 71.7
Lalb_Chr16g0376681 Lupinus albus HOM05D002424 ORTHO05D000276 4.1e-16 87.8 56 67.9
MELO3C009700.2 Cucumis melo HOM05D000414 ORTHO05D000276 5.4e-16 87.4 54 72.2
SalBow6G0232 Salvia bowleyana HOM05D000414 ORTHO05D000276 5.4e-16 87.4 65 66.2
SalBow6G0871 Salvia bowleyana HOM05D000414 ORTHO05D000276 5.4e-16 87.4 65 66.2
Glyma.01G230400 Glycine max HOM05D000414 ORTHO05D000276 7.0e-16 87.0 56 71.4
EL10Ac8g19329 Beta vulgaris HOM05D000414 ORTHO05D000276 9.2e-16 86.7 53 69.8
CANSAT64G0137 Cannabis sativa HOM05D000414 ORTHO05D000276 9.2e-16 86.7 56 73.2
Ca_24468_v3 Cicer arietinum L. HOM05D000414 ORTHO05D000276 1.6e-15 85.9 65 63.1
Lj1C1074G3 Lonicera japonica HOM05D000414 ORTHO05D000276 2.0e-15 85.5 56 69.6
CsaV3_3G039590 Cucumis sativus L. HOM05D000414 ORTHO05D000276 2.7e-15 85.1 54 70.4
Sed0000319 Sechium edule HOM05D000414 ORTHO05D000276 2.7e-15 85.1 54 68.5
MBI13_g47667_MAGBIO Magnolia biondii HOM05D000414 ORTHO05D000276 7.8e-15 83.6 64 60.9
ECA247G3687 Erigeron canadensis HOM05D000414 ORTHO05D000276 3.0e-14 81.6 55 67.3
MBI13_g30853_MAGBIO Magnolia biondii HOM05D000414 ORTHO05D000276 3.0e-14 81.6 64 59.4
C04p02340 Brassica napus HOM05D000414 ORTHO05D000276 6.6e-14 80.5 70 57.1
BolC4t21880H Brassica oleracea HOM05D000414 ORTHO05D000276 6.6e-14 80.5 70 57.1
BcaC02g12741 Brassica carinata HOM05D000414 ORTHO05D000276 8.6e-14 80.1 56 66.1
CSS0023959 Camellia sinensis var. sinensis HOM05D000414 ORTHO05D000276 1.5e-13 79.3 57 68.4
Psat2g187400 Pisum sativum HOM05D000414 ORTHO05D000276 3.3e-13 78.2 65 60.0
Aa31LG3G1080 Aethionema arabicum HOM05D000414 ORTHO05D000276 4.3e-13 77.8 54 64.8
HanXRQChr10g0298531 Helianthus annuus HOM05D000414 ORTHO05D000276 9.5e-13 76.6 55 61.8
Lsat_1_v5_gn_9_32301 Lactuca sativa HOM05D000414 ORTHO05D000276 1.2e-12 76.3 53 64.2
Zm00001eb333140 Zea mays HOM05D000414 ORTHO05D000276 3.6e-12 74.7 53 64.2
Carub.0004s2326 Capsella rubella HOM05D000414 ORTHO05D000276 2.6e-10 68.6 51 62.7
Os01g0267400 Oryza sativa ssp. japonica HOM05D000414 ORTHO05D000276 1.3e-09 66.2 55 61.8
SEGI_15459 Sequoiadendron giganteum HOM05D000414 ORTHO05D000276 4.9e-09 64.3 54 55.6
Mapoly0024s0111 Marchantia polymorpha HOM05D002424 ORTHO05D000276 3.2e-08 61.6 52 50.0
SMO364G0805 Selaginella moellendorffii HOM05D002424 ORTHO05D000276 1.3e-06 56.2 30 70.0
CSS0017179 Camellia sinensis var. sinensis HOM05D000414 ORTHO05D000276 1.7e-06 55.8 37 56.8
CBR_g19739 Chara braunii HOM05D002424 ORTHO05D000276 3.9e-06 54.7 53 52.8
FAN07G0303 Fragaria x ananassa HOM05D000414 ORTHO05D000276 5.1e-06 54.3 63 41.3
FAN12G2313 Fragaria x ananassa HOM05D000414 ORTHO05D000276 5.1e-06 54.3 63 41.3
Hma1.2p1_0089F.1_g045320 Hydrangea macrophylla HOM05D000414 ORTHO05D000276 6.6e-06 53.9 35 60.0
MD00G1133300 Malus domestica HOM05D000414 ORTHO05D000276 6.6e-06 53.9 57 45.6
Ciclev10016918m.g Citrus clementina HOM05D000414 ORTHO05D000276 8.6e-06 53.5 35 54.3
unitig_52.g17281 Utricularia gibba HOM05D000414 ORTHO05D000276 8.6e-06 53.5 33 63.6


User provided reference genes

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