Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 7.9e-244 846.7 423 100.0
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 4.8e-225 784.3 424 91.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 4.1e-192 674.9 423 79.4
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 5.6e-189 664.5 424 77.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.8e-158 563.1 372 73.9
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 7.1e-152 541.2 428 63.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 4.3e-149 531.9 424 61.3
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 5.6e-149 531.6 423 63.1
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 8.2e-148 527.7 389 68.1
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 8.2e-148 527.7 423 62.9
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 2.0e-146 523.1 423 60.0
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 5.8e-146 521.5 423 61.2
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 3.2e-144 515.8 420 61.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.2e-143 513.8 428 60.7
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 4.6e-143 511.9 426 61.3
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 7.9e-143 511.1 423 61.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.6e-140 503.4 429 60.1
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 4.8e-140 501.9 425 59.8
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.4e-139 500.4 423 59.3
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.9e-136 490.0 426 59.6
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.6e-135 485.7 423 57.4
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 6.1e-135 485.0 427 58.8
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.3e-133 479.2 426 57.7
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.4e-131 473.0 424 59.9
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 4.1e-131 472.2 418 59.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.7e-129 466.8 371 62.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.9e-129 466.1 424 59.2
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 6.5e-129 464.9 427 54.3
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 8.5e-129 464.5 362 64.9
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.4e-128 463.8 418 58.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 4.2e-128 462.2 426 56.1
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.0e-126 456.1 428 55.1
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.7e-126 454.9 423 57.4
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.0e-125 453.4 447 52.8
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.0e-125 453.4 423 57.4
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 5.7e-125 451.8 428 54.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 7.4e-125 451.4 428 54.0
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 9.7e-125 451.1 426 54.2
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 3.7e-124 449.1 438 56.2
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 8.2e-124 448.0 435 54.3
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.1e-123 447.6 424 54.2
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 2.4e-123 446.4 427 54.8
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.4e-123 446.4 439 56.0
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 7.0e-123 444.9 428 55.1
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.6e-122 443.0 467 52.0
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.4e-122 442.6 427 54.3
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-121 440.7 423 56.5
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.4e-120 434.5 424 52.6
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.2e-119 434.1 426 53.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.6e-119 433.7 420 52.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.1e-119 433.3 419 56.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 4.7e-119 432.2 390 57.9
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.3e-118 429.9 424 52.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 3.9e-118 429.1 426 51.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 6.7e-118 428.3 426 51.4
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 8.8e-118 427.9 426 51.2
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.1e-117 427.6 420 53.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-117 426.0 421 51.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 4.4e-117 425.6 424 52.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 4.4e-117 425.6 428 52.6
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-116 423.7 421 51.5
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.7e-116 423.7 427 54.3
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 6.3e-116 421.8 427 51.5
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.8e-115 420.2 391 54.7
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.4e-115 419.9 426 50.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.1e-115 419.1 425 52.2
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.1e-115 419.1 428 50.7
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 7.0e-115 418.3 375 54.9
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.1e-115 417.9 399 56.9
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 4.5e-114 415.6 461 49.7
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.5e-112 410.6 428 50.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 4.2e-112 409.1 427 52.7
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 7.2e-112 408.3 429 51.3
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.2e-111 407.5 465 49.5
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 8.0e-111 404.8 429 49.7
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.3e-110 403.3 427 50.1
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 4.0e-110 402.5 429 49.4
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 6.7e-110 401.7 426 50.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 8.8e-110 401.4 429 50.3
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 8.8e-110 401.4 429 50.3
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.0e-109 400.2 428 52.6
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.6e-109 399.8 426 52.1
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 3.3e-109 399.4 431 49.4
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 5.7e-109 398.7 427 50.8
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.7e-108 397.1 422 50.0
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.2e-108 396.7 426 51.6
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.4e-107 393.3 386 53.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 9.1e-107 391.3 428 49.1
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.2e-106 391.0 431 49.9
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-106 391.0 431 52.9
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 7.7e-106 388.3 396 50.0
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.7e-105 387.1 435 48.3
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-104 383.6 424 49.8
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 5.5e-104 382.1 422 50.7
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-103 380.6 424 48.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.1e-103 380.2 427 49.2
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.8e-100 369.0 429 47.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.1e-99 367.9 371 53.1
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 3.1e-99 366.3 419 46.5
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-98 363.2 426 46.5
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.3e-97 360.9 426 48.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 8.9e-94 348.2 406 47.8
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 7.5e-93 345.1 330 52.7
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.8e-92 343.2 425 46.6
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.5e-85 320.9 419 43.2
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 2.0e-85 320.5 359 48.7
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.3e-84 317.8 410 45.4
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.9e-83 313.9 426 42.3
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.0e-82 308.9 426 41.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 3.3e-72 276.6 339 48.7
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.2e-69 268.1 372 39.5
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 9.2e-67 258.5 208 60.1
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 6.0e-66 255.8 210 63.3
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.3e-65 253.8 353 39.9
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.8e-61 239.2 422 34.4
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 6.4e-60 235.7 256 52.3
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.4e-54 218.0 440 33.4
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 6.9e-54 215.7 391 35.8
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 3.2e-51 206.8 433 33.0
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.6e-50 204.5 189 49.7
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-48 198.0 339 36.9
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.9e-48 197.6 432 34.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.1e-47 194.1 166 59.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 6.9e-46 189.1 426 30.5
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 5.8e-45 186.0 440 32.3
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 5.4e-43 179.5 441 30.6
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-42 178.3 490 29.0
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 4.0e-38 163.3 124 60.5
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.5e-37 161.4 403 29.8
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.3e-36 158.3 435 29.4
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.5e-32 144.8 212 40.1
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.3e-28 131.7 222 36.5
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-27 128.6 462 27.5
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-17 94.4 72 51.4
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-16 91.3 237 30.0
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.3e-15 88.6 76 51.3
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.1e-14 84.0 83 48.2
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.0e-13 81.3 96 46.9
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.7e-10 70.1 58 62.1
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 2.3e-09 67.8 62 48.4
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 8.8e-09 65.9 56 53.6
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-06 58.9 97 38.1
MCO06G199 Micromonas commoda HOM05D005393 ORTHO05D268998 5.3e-06 56.6 211 26.1


User provided reference genes

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