Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.8e-147 525.0 301 100.0
vmacro11330 Vaccinium macrocarpon HOM05D011420 ORTHO05D427076 3.1e-69 266.2 357 53.5
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.2e-30 137.1 253 44.7
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.3e-24 115.9 104 66.3
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 3.2e-21 106.7 104 62.5
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 4.6e-20 102.8 104 57.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.9e-18 97.4 106 54.7
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 7.4e-18 95.5 62 75.8
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 3.7e-17 93.2 106 53.8
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 4.8e-17 92.8 62 72.6
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 3.1e-16 90.1 65 70.8
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 6.9e-16 89.0 90 54.4
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 6.9e-16 89.0 62 69.4
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 1.2e-15 88.2 61 73.8
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.5e-15 87.8 113 49.6
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 3.4e-15 86.7 113 48.7
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 3.4e-15 86.7 58 69.0
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.4e-15 86.7 58 81.0
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 4.5e-15 86.3 115 47.8
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 7.6e-15 85.5 118 48.3
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.3e-14 84.7 60 73.3
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 1.7e-14 84.3 62 66.1
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 4.9e-14 82.8 59 69.5
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 4.9e-14 82.8 89 50.6
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 4.9e-14 82.8 61 65.6
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 4.9e-14 82.8 87 50.6
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.1e-13 81.6 84 51.2
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.1e-13 81.6 115 48.7
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 1.4e-13 81.3 65 69.2
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 1.4e-13 81.3 63 61.9
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.4e-13 81.3 58 67.2
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 3.2e-13 80.1 61 63.9
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 3.2e-13 80.1 62 64.5
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 4.2e-13 79.7 57 70.2
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 7.1e-13 79.0 67 62.7
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 7.1e-13 79.0 124 46.0
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 1.2e-12 78.2 88 52.3
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 1.2e-12 78.2 133 41.4
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 1.6e-12 77.8 60 63.3
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 2.1e-12 77.4 63 61.9
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 2.1e-12 77.4 62 61.3
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 2.7e-12 77.0 57 66.7
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.7e-12 77.0 66 60.6
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 2.7e-12 77.0 108 45.4
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.7e-12 77.0 62 61.3
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.7e-12 77.0 62 61.3
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 2.7e-12 77.0 85 47.1
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 3.5e-12 76.6 57 66.7
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 3.5e-12 76.6 110 40.9
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 4.6e-12 76.3 58 60.3
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 4.6e-12 76.3 71 56.3
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 4.6e-12 76.3 58 62.1
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 6.0e-12 75.9 102 42.2
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 6.0e-12 75.9 102 42.2
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 7.9e-12 75.5 67 58.2
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 7.9e-12 75.5 67 58.2
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 7.9e-12 75.5 67 62.7
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.0e-11 75.1 57 61.4
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 1.0e-11 75.1 61 60.7
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.0e-11 75.1 61 60.7
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.0e-11 75.1 66 63.6
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 1.8e-11 74.3 58 60.3
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.3e-11 73.9 62 59.7
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 2.3e-11 73.9 58 65.5
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.3e-11 73.9 58 63.8
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 3.0e-11 73.6 61 65.6
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 3.0e-11 73.6 58 55.2
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 3.9e-11 73.2 135 35.6
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 3.9e-11 73.2 121 41.3
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 3.9e-11 73.2 60 60.0
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 3.9e-11 73.2 82 48.8
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 5.1e-11 72.8 58 58.6
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 6.7e-11 72.4 68 54.4
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 6.7e-11 72.4 66 54.5
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 6.7e-11 72.4 116 38.8
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 8.7e-11 72.0 57 57.9
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 8.7e-11 72.0 58 60.3
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.1e-10 71.6 102 41.2
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.1e-10 71.6 102 41.2
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.1e-10 71.6 102 41.2
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.1e-10 71.6 61 62.3
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 1.1e-10 71.6 120 40.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.1e-10 71.6 65 61.5
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 1.1e-10 71.6 59 62.7
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.9e-10 70.9 101 44.6
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 3.3e-10 70.1 64 59.4
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 5.6e-10 69.3 58 62.1
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.6e-09 67.8 101 42.6
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 2.1e-09 67.4 57 54.4
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 4.8e-09 66.2 57 59.6
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 6.2e-09 65.9 55 61.8
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 8.2e-09 65.5 58 58.6
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.1e-08 65.1 56 58.9
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 1.1e-08 65.1 58 58.6
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 3.1e-08 63.5 103 41.7
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 6.9e-08 62.4 46 63.0
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 1.3e-06 58.2 65 49.2
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 4.9e-06 56.2 57 49.1


User provided reference genes

Program Settings