Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.7e-197 691.8 351 100.0
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.4e-129 466.1 403 67.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.8e-117 426.0 392 62.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.8e-116 423.3 391 62.9
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 6.0e-104 381.7 395 57.7
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 4.8e-93 345.5 390 52.8
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-90 337.0 388 52.1
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.5e-88 329.3 392 50.5
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.1e-87 325.5 392 51.5
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 9.6e-86 321.2 389 52.2
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.9e-84 315.1 396 50.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 9.0e-84 314.7 368 51.6
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 5.8e-83 312.0 389 51.2
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 7.6e-83 311.6 392 50.3
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.2e-82 310.1 389 50.1
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 4.9e-82 308.9 359 52.6
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.2e-81 305.8 360 51.9
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.1e-80 303.5 389 49.1
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.6e-80 302.4 385 48.6
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.0e-79 299.7 222 72.5
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 3.0e-79 299.7 452 44.7
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.0e-79 299.7 361 48.8
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 3.0e-79 299.7 363 51.8
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 5.1e-79 298.9 393 47.8
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.5e-78 297.4 396 47.5
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 4.3e-78 295.8 391 46.5
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.6e-78 294.7 392 46.9
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.1e-77 293.5 396 46.7
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 4.8e-77 292.4 396 45.7
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 4.8e-77 292.4 392 46.9
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 6.2e-77 292.0 395 47.1
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 8.2e-77 291.6 387 46.8
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.1e-76 291.2 393 47.6
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.1e-76 289.7 364 48.6
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 4.1e-76 289.3 346 50.3
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.9e-76 288.5 364 48.6
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 1.2e-75 287.7 386 47.7
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.2e-75 287.7 436 44.0
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.5e-75 287.3 365 49.6
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 4.5e-75 285.8 359 47.1
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 7.6e-75 285.0 359 48.2
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.3e-74 284.3 392 45.9
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.7e-74 283.9 360 48.9
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 2.2e-74 283.5 395 46.1
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.9e-74 283.1 396 44.4
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.9e-74 283.1 393 45.3
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.9e-74 283.1 376 47.1
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.9e-74 283.1 374 46.8
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 6.5e-74 282.0 380 45.3
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 8.4e-74 281.6 392 47.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.1e-73 281.2 390 44.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.9e-73 280.4 380 45.0
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.5e-73 280.0 387 46.0
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 4.2e-73 279.3 391 43.7
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 5.5e-73 278.9 390 44.1
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 5.5e-73 278.9 363 48.2
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 7.1e-73 278.5 394 45.7
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 9.3e-73 278.1 393 45.8
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.2e-72 277.7 353 47.0
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.2e-72 277.7 395 44.8
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.2e-72 277.7 390 43.8
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 7.9e-72 275.0 355 47.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.9e-72 275.0 348 48.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 7.9e-72 275.0 394 44.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.0e-71 274.6 355 47.3
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.8e-71 273.9 358 46.1
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.3e-71 273.5 390 45.1
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.0e-71 273.1 390 45.1
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 5.1e-71 272.3 394 44.4
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 6.7e-71 271.9 363 46.3
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 8.7e-71 271.6 392 45.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 8.7e-71 271.6 386 44.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.1e-70 271.2 344 46.8
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.5e-70 270.8 386 44.6
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-70 270.4 366 46.4
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.9e-70 270.4 395 44.1
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-70 270.4 386 43.8
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 4.3e-70 269.2 342 47.1
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 7.4e-70 268.5 345 47.2
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 6.3e-69 265.4 301 51.2
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.1e-68 264.6 355 46.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.1e-68 264.6 340 48.2
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.4e-68 264.2 390 45.6
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 9.0e-68 261.5 385 45.2
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.5e-67 259.2 284 53.5
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 5.9e-67 258.8 397 44.8
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-66 256.9 396 42.9
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 5.5e-65 252.3 335 46.6
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.2e-64 251.1 362 46.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 1.2e-64 251.1 401 43.6
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 7.9e-64 248.4 205 63.4
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.3e-63 246.9 360 41.1
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 5.1e-63 245.7 338 46.2
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 5.1e-63 245.7 386 42.7
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.1e-62 244.6 287 53.0
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.5e-62 244.2 389 43.7
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.5e-62 244.2 373 43.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 3.3e-62 243.0 385 41.6
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 4.3e-62 242.7 385 41.0
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.7e-61 240.7 384 40.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.7e-61 240.7 386 42.0
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.1e-60 238.0 388 42.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.4e-60 237.7 365 44.4
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 1.8e-60 237.3 384 40.6
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.8e-60 237.3 387 42.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.4e-60 236.9 402 40.3
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.4e-60 236.9 385 42.1
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-60 236.5 384 40.9
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.1e-60 236.5 384 40.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 3.1e-60 236.5 382 40.6
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.1e-60 236.5 356 42.1
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 5.3e-60 235.7 384 40.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 5.3e-60 235.7 384 40.6
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 5.3e-60 235.7 392 41.8
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 3.4e-59 233.0 387 41.1
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.3e-58 231.1 385 40.5
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 2.9e-58 229.9 384 39.6
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 8.5e-58 228.4 389 41.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.2e-57 226.5 347 42.1
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 5.5e-57 225.7 385 39.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.1e-56 223.8 385 39.2
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.4e-55 221.1 385 38.7
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.3e-54 216.5 389 39.1
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 5.7e-54 215.7 296 44.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.8e-53 212.6 261 52.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.4e-52 211.1 395 37.7
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 5.3e-52 209.1 342 39.8
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.2e-50 203.8 195 53.8
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.9e-50 203.4 397 39.0
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 5.0e-50 202.6 199 51.3
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.2e-48 198.0 332 38.0
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.7e-42 177.6 258 44.2
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-41 174.9 140 68.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.8e-39 165.2 253 44.7
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.5e-38 164.5 356 30.3
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.7e-34 151.0 243 44.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.7e-34 151.0 417 29.7
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.5e-33 147.9 224 46.4
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 4.2e-33 146.4 321 36.1
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.2e-32 144.8 279 33.3
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.8e-31 138.7 204 44.1
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 3.1e-28 130.2 286 35.0
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.9e-25 120.9 309 32.0
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.9e-21 106.3 65 78.5
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.7e-19 100.5 128 50.8
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 7.3e-17 92.4 89 58.4
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-16 91.7 155 42.6
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 8.0e-16 89.0 96 46.9
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 6.8e-15 85.9 236 31.8
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.4e-12 77.4 113 46.0
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.1e-12 76.6 71 52.1
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.0e-11 74.3 91 51.6
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.5e-11 73.6 49 73.5
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-10 71.2 124 37.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.7e-10 71.2 119 37.0
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 3.9e-10 70.1 99 45.5
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.0e-10 69.7 185 33.0
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 4.3e-09 66.6 197 28.9


User provided reference genes

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