Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.8e-132 474.6 246 100.0
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 4.5e-106 388.3 246 82.5
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 4.4e-85 318.5 256 70.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.5e-85 317.8 256 70.7
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.7e-79 298.5 274 64.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 2.6e-77 292.7 253 63.6
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 3.1e-67 259.2 253 60.1
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.6e-63 246.9 256 55.9
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.1e-59 234.2 262 54.2
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.2e-59 232.6 260 55.8
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 3.6e-55 219.2 258 53.9
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.1e-54 216.1 259 52.1
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 8.9e-54 214.5 250 51.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 8.9e-54 214.5 258 53.9
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.4e-53 212.6 260 53.5
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 5.8e-53 211.8 254 54.3
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 7.5e-53 211.5 255 49.4
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.3e-52 210.7 257 52.1
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.3e-52 210.7 259 54.4
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.9e-52 209.5 256 49.2
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.9e-52 209.5 249 53.0
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 3.7e-52 209.1 249 51.0
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.4e-51 207.2 201 59.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 3.2e-51 206.1 258 48.4
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 2.0e-50 203.4 252 49.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.5e-50 202.6 247 51.8
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-49 200.3 248 50.4
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.7e-49 200.3 259 48.6
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 3.9e-49 199.1 257 47.1
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.9e-49 199.1 248 49.6
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 8.6e-49 198.0 259 52.5
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-48 197.6 248 49.2
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.5e-48 197.2 248 48.8
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.3e-48 195.7 247 50.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 5.6e-48 195.3 257 48.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.6e-48 195.3 219 53.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 9.5e-48 194.5 267 48.3
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.2e-47 194.1 260 49.6
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-47 193.7 258 45.7
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 4.7e-47 192.2 269 47.2
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.1e-46 191.0 256 48.8
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.4e-46 190.7 256 49.2
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.3e-46 189.9 236 48.3
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 3.1e-46 189.5 258 51.6
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 6.8e-46 188.3 265 49.1
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.0e-45 186.8 258 48.8
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-45 186.4 260 51.9
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 4.4e-45 185.7 260 44.2
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 9.8e-45 184.5 228 48.7
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.3e-44 184.1 266 46.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 2.2e-44 183.3 260 43.8
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 6.4e-44 181.8 262 46.6
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.1e-43 181.0 241 46.5
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.4e-43 179.9 260 46.2
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 3.2e-43 179.5 254 46.1
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 3.2e-43 179.5 258 45.3
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-43 179.1 289 43.9
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 7.1e-43 178.3 256 47.3
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 9.2e-43 177.9 258 44.2
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.1e-42 176.8 258 47.3
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-41 173.7 238 48.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 8.6e-41 171.4 254 45.7
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-40 171.0 238 47.5
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.1e-40 171.0 261 44.4
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 7.3e-40 168.3 257 45.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 7.3e-40 168.3 258 43.0
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 9.5e-40 167.9 258 45.0
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 9.5e-40 167.9 276 43.8
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 9.5e-40 167.9 251 44.6
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.6e-39 167.2 251 44.2
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.7e-39 165.6 233 47.6
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 8.1e-39 164.9 252 47.2
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 8.1e-39 164.9 259 42.1
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.1e-38 164.5 257 44.4
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.1e-38 164.5 260 42.3
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.2e-37 161.0 268 43.3
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-37 161.0 219 43.4
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.2e-37 161.0 257 44.7
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.6e-37 159.8 253 44.7
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 3.4e-37 159.5 264 42.8
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 5.8e-37 158.7 260 41.9
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 9.9e-37 157.9 249 44.2
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 9.9e-37 157.9 256 43.8
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.7e-36 157.1 258 44.2
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.7e-36 157.1 249 43.8
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.7e-36 157.1 206 47.1
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.4e-36 155.2 249 45.0
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-35 154.5 249 45.0
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.9e-35 153.7 256 40.6
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.2e-35 152.9 258 42.6
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 4.1e-35 152.5 249 44.6
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.6e-34 150.6 256 39.8
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.1e-34 150.2 264 42.0
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 2.1e-34 150.2 256 40.6
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 2.7e-34 149.8 262 42.4
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.7e-34 149.8 249 44.2
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 6.0e-34 148.7 258 41.9
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 3.0e-33 146.4 256 42.6
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 6.6e-33 145.2 253 41.9
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 8.6e-33 144.8 260 42.7
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 3.3e-32 142.9 240 42.1
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 3.3e-32 142.9 255 41.6
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 4.3e-32 142.5 267 37.8
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.2e-31 141.0 265 39.6
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.6e-31 139.4 178 50.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 4.7e-31 139.0 248 40.7
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 4.7e-31 139.0 255 42.0
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.8e-30 137.1 267 37.8
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.0e-30 136.0 265 36.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-29 134.0 255 38.0
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.5e-29 134.0 254 39.8
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 2.0e-29 133.7 226 41.2
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 2.0e-29 133.7 183 47.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.6e-29 133.3 261 39.1
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.4e-29 132.9 256 39.8
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 4.4e-29 132.5 243 40.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 9.9e-29 131.3 229 39.3
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.3e-28 131.0 248 39.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 1.7e-28 130.6 243 40.7
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 8.4e-28 128.3 243 40.3
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-27 127.9 243 40.3
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-27 127.9 253 38.7
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-27 127.1 187 45.5
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.9e-27 127.1 254 38.6
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 7.1e-27 125.2 258 39.9
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.6e-26 124.0 263 39.2
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.1e-26 123.6 229 41.0
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.1e-26 123.6 258 39.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 6.0e-26 122.1 233 37.8
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.3e-25 120.9 254 38.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.3e-25 120.2 242 36.8
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.5e-24 117.5 279 34.8
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.9e-24 117.1 262 38.5
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.3e-24 116.3 146 43.8
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.3e-24 115.9 171 44.4
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.6e-23 114.0 259 35.9
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 4.5e-21 105.9 257 33.5
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 9.9e-21 104.8 178 40.4
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.9e-20 102.4 108 52.8
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-19 101.3 237 34.6
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-18 97.4 182 39.6
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.9e-16 90.5 274 29.9
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 4.0e-14 82.8 148 41.2
vmacro03875 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 1.3e-12 77.8 116 50.0
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.1e-11 74.7 249 31.7
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.4e-11 74.3 165 34.5
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.3e-11 71.6 100 48.0
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 4.6e-10 69.3 68 58.8
vmacro03916 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 5.1e-09 65.9 116 45.7
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 8.7e-09 65.1 233 31.3
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 9.6e-08 61.6 146 30.1


User provided reference genes

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