Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 0.0e+00 1574.7 1011 100.0
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 0.0e+00 1076.6 1027 78.1
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.5e-256 889.4 1047 69.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 8.5e-244 847.8 1047 67.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.3e-239 833.9 1094 60.8
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.0e-236 824.3 1036 65.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.8e-236 822.4 941 67.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.0e-232 810.1 1003 63.5
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 9.8e-232 807.7 1109 62.1
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 9.1e-230 801.2 1001 67.8
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 9.4e-227 791.2 1037 61.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.6e-226 790.4 1016 64.4
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.1e-226 790.0 814 76.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 6.1e-226 788.5 1007 62.2
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 8.0e-226 788.1 1031 65.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 7.5e-224 781.6 1020 65.9
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.0e-221 773.5 1008 61.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.5e-221 772.7 1012 63.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.9e-221 771.9 799 75.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 8.6e-220 768.1 1035 63.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 9.5e-219 764.6 1004 60.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.7e-215 753.8 1027 63.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-213 747.7 973 59.7
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.5e-211 740.7 1007 59.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.9e-211 740.3 1016 62.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 5.6e-211 738.8 944 58.6
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.8e-210 736.5 1043 63.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.4e-208 729.6 1005 60.6
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 4.9e-207 725.7 1042 59.6
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.4e-206 724.2 1013 56.5
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.0e-205 720.3 832 70.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 2.0e-205 720.3 1036 63.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-204 718.0 1018 63.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.0e-204 715.7 802 73.3
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.1e-203 714.5 802 73.2
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.5e-203 713.4 898 67.0
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.6e-203 712.2 910 66.9
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-200 703.7 997 61.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.4e-200 703.0 835 69.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.4e-200 703.0 1027 58.5
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 5.8e-200 702.2 910 63.6
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.7e-199 700.7 936 64.3
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.2e-199 700.3 896 62.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.2e-199 700.3 835 69.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 3.7e-199 699.5 1015 57.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 6.4e-199 698.7 801 72.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.4e-198 697.6 1002 61.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.9e-198 697.2 801 68.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.4e-198 696.8 1015 57.5
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.2e-198 696.4 1013 60.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 4.1e-198 696.0 1010 61.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.4e-198 695.7 1010 61.2
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 7.1e-198 695.3 912 65.8
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.7e-197 693.3 813 69.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.0e-197 692.2 964 64.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.0e-197 692.2 835 69.0
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.7e-196 690.6 852 67.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.0e-196 689.9 804 71.6
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.9e-196 689.5 1031 59.2
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 8.6e-196 688.3 817 70.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.1e-195 688.0 986 62.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.1e-195 688.0 918 64.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.5e-195 687.6 809 68.7
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 7.3e-195 685.3 801 70.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.5e-195 684.9 813 67.8
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 9.5e-195 684.9 996 61.9
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-194 684.5 819 71.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.8e-194 683.3 811 71.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.8e-194 683.3 836 67.8
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.6e-194 682.9 1025 59.8
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.4e-193 681.0 1055 60.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 4.0e-193 679.5 815 70.2
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-193 679.5 1005 60.7
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 4.4e-192 676.0 801 69.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.4e-192 676.0 1030 60.4
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.4e-190 670.2 1010 58.5
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.1e-189 667.2 909 64.6
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.7e-189 666.8 829 69.1
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 7.8e-189 665.2 914 59.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.7e-188 664.1 813 68.1
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.3e-188 663.7 999 59.7
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 8.6e-188 661.8 800 68.8
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 4.3e-187 659.4 825 60.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 9.6e-187 658.3 803 67.2
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-186 657.9 806 69.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 4.7e-186 656.0 806 70.6
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 6.2e-186 655.6 792 67.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 8.9e-185 651.7 741 70.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 3.4e-184 649.8 799 69.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.8e-184 649.0 808 68.3
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.2e-183 647.1 813 65.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.4e-182 642.5 823 67.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.5e-179 634.4 1017 56.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 5.6e-179 632.5 817 62.4
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.1e-178 628.6 1010 56.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.8e-177 627.5 1028 55.8
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-176 624.8 1013 57.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.2e-175 620.5 795 66.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.2e-175 620.5 1021 56.0
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 6.4e-175 619.0 949 57.9
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.9e-174 617.5 919 61.2
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.2e-174 616.7 1024 49.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.7e-173 613.6 804 66.0
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.7e-172 608.6 903 59.2
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.9e-171 607.4 830 63.4
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-170 604.4 830 65.5
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.1e-169 601.7 1019 55.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 3.4e-168 596.7 1024 55.2
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 3.4e-168 596.7 1024 55.2
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.9e-167 592.8 813 61.3
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.4e-166 590.5 915 57.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.6e-165 587.8 1020 53.7
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.1e-165 587.4 815 63.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.7e-165 587.0 1004 55.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-163 580.5 815 62.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 5.6e-163 579.3 1016 54.7
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-162 578.2 1011 54.5
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 4.8e-162 576.2 959 52.6
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-161 575.1 850 63.4
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.8e-161 574.3 1011 54.7
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 6.9e-161 572.4 1020 54.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 3.5e-157 560.1 777 62.2
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.5e-155 554.7 793 65.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.5e-155 553.9 912 56.5
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.6e-154 551.2 860 52.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 4.8e-154 549.7 833 55.8
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 6.9e-153 545.8 804 55.5
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.6e-152 543.9 804 55.3
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.6e-152 543.9 804 55.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-148 531.6 807 56.0
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 9.7e-147 525.4 810 60.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.5e-144 518.1 792 61.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-142 511.9 1006 47.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.5e-142 509.6 807 54.2
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.2e-142 509.2 728 58.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.1e-141 507.7 807 54.4
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.7e-141 507.3 802 49.8
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.9e-140 503.4 807 54.2
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 1.7e-138 498.0 672 71.1
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.8e-137 494.6 829 53.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 5.3e-137 493.0 657 63.6
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 7.9e-133 479.2 807 53.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.6e-131 474.2 637 72.8
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.8e-130 469.9 684 60.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.8e-124 449.1 907 48.6
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-123 448.0 900 49.8
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-123 447.6 821 49.2
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.7e-120 436.0 608 59.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.9e-118 431.4 790 51.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.9e-112 409.8 931 46.2
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-109 401.7 927 50.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.8e-109 401.0 511 67.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 6.8e-100 369.8 966 33.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.7e-95 355.1 632 66.1
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.3e-94 350.5 322 70.5
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 9.5e-94 349.4 952 44.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 8.0e-93 346.3 468 50.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.1e-84 319.3 674 47.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-82 312.0 1287 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.2e-82 311.6 621 56.0
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 4.9e-82 310.5 645 52.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.6e-80 303.9 397 51.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.7e-69 267.3 317 79.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.2e-67 262.7 255 67.5
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.4e-67 260.8 356 46.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 5.6e-54 217.2 147 74.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 4.2e-49 201.1 211 53.6
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-34 152.5 206 47.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 8.2e-29 133.7 120 60.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 9.1e-28 130.2 88 77.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.6e-27 128.6 81 77.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.0e-22 112.5 71 76.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.7e-22 110.9 167 46.1
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.7e-13 82.8 289 59.2
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.2e-10 72.4 208 29.8
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.2e-10 72.4 62 53.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.3e-06 58.5 187 28.9


User provided reference genes

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