Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.6e-191 672.5 321 100.0
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 8.3e-169 597.0 321 87.9
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 3.9e-166 588.2 321 86.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.5e-165 586.3 320 84.4
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.5e-165 585.5 321 88.8
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.5e-162 576.2 321 82.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 5.8e-162 574.3 317 84.5
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 4.9e-161 571.2 319 82.4
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 4.9e-161 571.2 315 84.4
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 8.3e-161 570.5 319 83.1
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 8.3e-161 570.5 317 83.9
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.1e-160 570.1 315 82.2
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 3.2e-160 568.5 315 83.2
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 7.0e-160 567.4 312 84.0
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.5e-159 565.1 321 81.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.0e-159 564.3 315 82.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.0e-158 563.5 321 81.9
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 1.7e-158 562.8 320 82.2
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.3e-158 562.4 315 82.9
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.0e-158 562.0 315 82.5
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 6.6e-158 560.8 315 81.9
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 8.6e-158 560.5 303 85.8
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.1e-157 560.1 315 82.9
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.1e-157 560.1 313 82.7
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 3.3e-157 558.5 315 82.5
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.3e-157 558.5 315 81.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 5.6e-157 557.8 315 81.0
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 5.6e-157 557.8 319 80.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.6e-157 557.8 315 81.6
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 7.3e-157 557.4 327 79.8
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.2e-156 556.6 321 80.7
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 2.8e-156 555.4 313 83.1
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 4.7e-156 554.7 311 83.0
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 4.7e-156 554.7 315 83.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 6.2e-156 554.3 315 83.2
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 6.2e-156 554.3 315 80.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.8e-155 552.7 319 79.3
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 3.1e-155 552.0 301 85.0
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 4.0e-155 551.6 321 80.1
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 4.0e-155 551.6 316 79.7
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 5.2e-155 551.2 313 82.4
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 5.2e-155 551.2 315 80.6
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 6.8e-155 550.8 321 79.4
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.8e-155 550.8 315 81.6
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 6.8e-155 550.8 313 81.2
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.2e-154 550.1 299 84.3
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.5e-154 549.7 321 79.1
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.5e-154 549.7 315 80.6
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.6e-154 548.9 314 80.9
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 2.6e-154 548.9 314 79.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 3.4e-154 548.5 321 79.4
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 9.9e-154 547.0 314 80.6
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 9.9e-154 547.0 321 81.0
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.3e-153 546.6 308 82.5
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.7e-153 546.2 318 78.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 3.7e-153 545.0 299 84.3
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 4.9e-153 544.7 316 78.5
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 8.3e-153 543.9 311 81.4
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.1e-152 543.5 301 83.7
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.9e-152 542.7 315 79.7
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.9e-152 542.7 304 82.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 2.4e-152 542.3 315 79.7
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 9.2e-152 540.4 317 80.8
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.6e-151 539.7 317 79.2
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 2.7e-151 538.9 301 83.7
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 3.5e-151 538.5 302 82.1
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.5e-149 533.1 301 81.4
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 9.5e-149 530.4 316 78.5
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.8e-148 528.9 316 78.5
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 6.2e-148 527.7 316 78.2
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 6.2e-148 527.7 305 80.0
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.4e-147 526.6 315 78.1
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 5.2e-147 524.6 305 79.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 5.2e-147 524.6 322 78.9
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 5.2e-147 524.6 312 77.6
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.5e-146 523.1 299 80.6
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.6e-146 522.3 371 68.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 5.4e-144 514.6 291 82.1
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 3.9e-142 508.4 284 84.5
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 6.6e-142 507.7 297 79.5
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.8e-139 499.6 313 75.7
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 9.0e-139 497.3 308 76.0
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.5e-138 496.5 313 71.9
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.0e-138 496.1 306 74.8
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.6e-135 486.5 268 84.3
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.3e-134 482.6 293 75.4
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.3e-134 482.6 270 83.0
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 2.3e-134 482.6 317 74.1
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.3e-132 476.9 313 68.7
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.4e-131 472.6 268 81.0
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 5.3e-131 471.5 248 86.7
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 9.9e-130 467.2 268 80.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 9.9e-130 467.2 313 66.8
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.4e-128 463.4 305 73.8
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.4e-128 461.5 268 80.2
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 4.3e-125 451.8 275 75.3
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.8e-124 449.1 254 83.5
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 4.8e-124 448.4 308 66.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 9.3e-120 434.1 273 75.8
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 3.9e-118 428.7 301 71.8
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 3.4e-114 415.6 287 66.2
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 3.2e-112 409.1 258 77.5
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.4e-107 393.7 234 78.6
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.1e-107 392.1 313 58.8
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.4e-104 383.6 218 82.1
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 4.6e-103 378.6 315 57.8
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 9.1e-99 364.4 208 81.2
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 6.3e-92 341.7 305 54.1
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 4.7e-87 325.5 326 48.8
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 9.1e-83 311.2 204 70.6
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.1e-79 300.1 182 75.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.2e-77 294.3 301 49.8
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 4.8e-76 288.9 288 46.9
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 8.3e-76 288.1 170 80.6
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.7e-71 272.3 165 76.4
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 3.5e-66 256.1 144 81.9
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.3e-65 254.2 170 71.2
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.4e-61 239.2 132 84.8
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 4.9e-60 235.7 182 65.9
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 4.9e-60 235.7 191 60.2
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 6.8e-54 215.3 118 80.5
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 3.4e-53 213.0 115 83.5
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.4e-51 206.8 135 71.1
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.2e-47 194.5 108 84.3
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.6e-45 186.8 104 82.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.4e-45 186.0 124 72.6
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 3.3e-40 169.9 172 52.3
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 3.6e-39 166.4 118 66.9
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.7e-36 157.5 105 69.5
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.6e-34 151.0 317 34.1
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.3e-33 147.1 320 34.1
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.6e-33 145.2 105 67.6
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 7.6e-29 132.1 95 70.5
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.3e-24 116.3 118 52.5
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 3.6e-23 113.2 71 76.1
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 2.0e-21 107.5 301 29.2
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.2e-19 99.8 95 52.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 9.3e-19 98.6 69 66.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 2.7e-18 97.1 69 66.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 6.9e-14 82.4 40 92.5
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 6.9e-14 82.4 40 92.5
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.6e-13 80.5 51 66.7
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 4.5e-13 79.7 38 94.7
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 5.8e-13 79.3 163 30.7
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 3.8e-12 76.6 55 65.5
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 6.4e-12 75.9 283 26.1
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.2e-10 71.6 310 27.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.6e-10 71.2 308 26.9
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.6e-10 71.2 291 25.4
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 4.6e-10 69.7 307 25.1
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.9e-10 68.9 302 23.8
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.0e-09 68.6 306 26.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.8e-09 67.8 300 26.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.3e-09 67.4 313 24.6
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 3.0e-09 67.0 81 45.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 3.9e-09 66.6 301 27.6
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.5e-08 64.7 306 23.9
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.5e-08 64.7 294 25.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.5e-08 63.9 300 25.3
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.3e-08 63.5 284 27.1
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 5.6e-08 62.8 300 25.0
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 5.6e-08 62.8 300 25.0
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 7.4e-08 62.4 300 25.3
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 9.6e-08 62.0 199 28.6
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 9.6e-08 62.0 297 25.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 9.6e-08 62.0 193 31.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.8e-07 60.5 255 26.3
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.7e-07 60.1 201 29.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 3.7e-07 60.1 123 35.0
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 6.2e-07 59.3 214 27.1
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 6.2e-07 59.3 193 30.1
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 6.2e-07 59.3 57 50.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.1e-07 58.9 141 28.4
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.4e-06 58.2 196 28.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.4e-06 57.4 215 28.8


User provided reference genes

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