Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.2e-210 735.3 364 100.0
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.1e-156 555.1 367 79.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.9e-147 524.6 360 74.7
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.9e-147 524.6 360 74.7
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 7.8e-139 497.7 365 70.4
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 5.2e-135 485.0 366 69.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.6e-115 418.7 362 61.6
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.7e-114 416.8 385 59.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.5e-113 413.7 367 59.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.9e-113 413.3 382 59.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.9e-111 404.8 356 61.2
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.9e-111 404.8 363 60.1
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.2e-110 404.1 360 59.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.2e-109 399.8 365 59.7
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.8e-109 399.1 360 61.1
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-108 397.1 360 61.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.4e-108 397.1 363 59.2
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.3e-108 394.4 363 57.3
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.2e-107 394.0 367 58.0
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-107 393.3 361 57.3
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 7.8e-107 391.3 362 59.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.3e-106 390.6 364 58.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-106 390.2 363 56.7
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.7e-106 390.2 363 58.7
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.5e-105 387.1 361 59.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-105 385.6 379 56.5
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 4.3e-105 385.6 379 56.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.3e-104 384.0 334 62.0
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.6e-104 383.6 365 56.4
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.1e-104 383.3 368 56.0
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.1e-103 379.4 360 58.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.2e-102 377.5 369 53.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 2.0e-102 376.7 369 56.4
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 9.9e-102 374.4 364 58.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.3e-101 374.0 360 56.9
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-101 373.6 358 55.3
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.9e-100 370.2 356 58.7
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 3.2e-100 369.4 368 54.6
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 9.3e-100 367.9 364 54.4
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.2e-99 367.5 361 55.7
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.1e-99 366.7 358 56.4
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.7e-99 366.3 363 54.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.5e-99 365.9 364 54.4
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.5e-99 365.9 363 54.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 4.6e-99 365.5 365 55.1
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.0e-99 365.2 367 54.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 7.9e-99 364.8 364 54.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 7.9e-99 364.8 367 55.0
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.8e-98 363.6 367 55.9
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 2.3e-98 363.2 366 55.7
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 5.1e-98 362.1 355 56.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.9e-97 360.1 366 53.8
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 9.6e-97 357.8 370 54.6
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.1e-96 356.7 363 54.0
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.1e-96 356.7 374 53.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.1e-96 356.7 362 56.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-96 356.3 365 53.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.8e-96 356.3 373 53.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 3.7e-96 355.9 359 54.3
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-95 354.4 358 54.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 4.5e-94 349.0 358 53.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 7.6e-94 348.2 283 62.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.0e-93 347.8 357 51.0
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.4e-93 344.7 365 53.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 8.4e-93 344.7 358 53.6
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.9e-92 343.6 358 52.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.5e-92 343.2 365 53.4
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 7.1e-92 341.7 362 52.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-91 340.9 334 54.5
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-91 340.5 393 49.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-91 340.5 393 49.1
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-91 340.5 395 49.1
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.1e-91 340.1 369 53.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.5e-91 339.3 368 52.2
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 6.0e-91 338.6 359 54.0
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-90 337.0 358 52.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.3e-90 336.7 364 52.7
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.3e-90 336.7 366 52.5
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.0e-90 336.3 376 51.6
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 8.7e-90 334.7 366 49.2
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.9e-89 333.6 295 60.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 4.3e-89 332.4 273 61.9
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.8e-88 329.7 271 60.9
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.7e-88 329.3 361 51.2
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.1e-87 327.8 356 50.3
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.8e-87 327.0 271 60.5
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.8e-87 327.0 374 52.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.4e-87 326.6 304 56.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 6.9e-87 325.1 265 60.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 9.0e-87 324.7 363 51.8
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.2e-86 324.3 361 51.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.2e-86 324.3 376 51.3
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.2e-86 324.3 359 51.8
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.0e-85 321.2 365 49.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.9e-85 318.9 361 49.9
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.9e-85 318.9 365 52.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 8.4e-85 318.2 365 49.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.5e-84 316.6 363 50.1
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.5e-84 316.6 356 50.0
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.2e-84 315.8 362 50.6
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 5.5e-84 315.5 368 50.3
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 7.1e-84 315.1 350 48.6
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.7e-83 313.2 361 49.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.7e-83 313.2 301 54.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.6e-83 312.4 356 50.3
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.6e-83 312.4 316 58.2
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 6.1e-83 312.0 372 46.8
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 7.9e-83 311.6 368 49.7
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.0e-82 311.2 359 50.7
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.3e-82 310.1 369 49.3
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.3e-82 310.1 356 50.0
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.9e-82 309.3 363 50.1
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.9e-82 309.3 349 50.1
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 2.5e-81 306.6 365 50.4
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.5e-81 306.6 366 48.6
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.5e-81 306.6 280 56.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 4.3e-81 305.8 295 55.9
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.8e-80 303.1 361 49.6
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.1e-79 301.2 284 54.2
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-79 300.8 358 48.3
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.5e-78 297.4 322 52.2
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.5e-78 295.8 362 48.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.7e-78 295.0 329 50.2
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 5.5e-76 288.9 357 47.9
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 3.0e-74 283.1 265 55.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.9e-74 282.7 358 48.3
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.7e-73 278.1 353 49.3
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.3e-72 277.7 300 54.0
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.1e-71 274.6 317 50.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 4.1e-71 272.7 261 55.2
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 9.1e-71 271.6 329 47.7
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.8e-69 266.2 317 48.3
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.2e-68 262.7 261 53.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.6e-67 260.8 311 46.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.6e-67 259.6 253 51.0
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.5e-65 254.2 317 46.1
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.6e-65 253.4 373 41.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.2e-64 250.4 273 47.3
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.2e-64 250.4 273 47.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.8e-64 250.0 273 47.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-60 237.3 363 41.6
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 4.7e-59 232.6 219 55.7
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.3e-58 230.3 150 77.3
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.3e-58 230.3 429 35.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.3e-56 222.2 228 55.7
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.2e-56 221.9 317 42.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.6e-51 206.5 269 45.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.1e-47 194.9 218 50.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.2e-46 191.4 329 37.7
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 7.7e-46 188.7 328 38.7
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.0e-45 186.0 182 56.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-44 184.9 323 40.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.8e-40 170.2 255 40.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-40 169.9 199 47.2
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.3e-37 160.6 204 50.0
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.7e-35 152.9 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 2.2e-32 144.1 450 25.8
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.4e-31 141.4 169 48.5
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.2e-30 138.3 176 44.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.9e-28 131.0 285 29.5
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.8e-26 124.4 161 44.7
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.8e-26 124.4 206 38.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-24 117.5 147 47.6
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 6.0e-22 109.4 77 63.6
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.1e-20 105.1 101 53.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 9.5e-20 102.1 115 47.0
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 6.2e-19 99.4 150 41.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.6e-17 94.0 105 41.9
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.6e-17 94.0 127 48.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.2e-16 90.9 65 63.1
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.7e-16 90.1 65 61.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.7e-16 90.1 110 46.4
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 8.3e-16 89.0 130 41.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 5.4e-15 86.3 153 33.3
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 6.0e-14 82.8 290 26.9
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-12 78.2 88 47.7
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.5e-09 68.2 147 32.0
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.6e-06 56.6 69 49.3
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 6.0e-06 56.2 170 27.6


User provided reference genes

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