Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.8e-109 398.7 206 100.0
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.3e-90 336.7 206 86.4
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 7.1e-81 304.3 206 78.2
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 7.4e-78 294.3 206 76.2
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.9e-76 287.7 178 85.4
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.4e-68 263.5 203 70.0
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.2e-64 250.4 198 66.7
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.8e-61 238.4 206 62.1
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.4e-60 236.9 206 61.7
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 7.7e-59 231.1 206 60.7
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.2e-58 229.6 207 59.4
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.2e-56 223.8 190 62.6
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 7.9e-56 221.1 206 58.3
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.8e-55 219.9 206 57.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.9e-55 218.8 205 59.5
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 5.2e-55 218.4 182 64.3
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 6.7e-55 218.0 169 68.0
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.1e-54 217.2 181 61.9
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.3e-54 215.7 188 60.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 4.4e-54 215.3 200 59.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 5.7e-54 214.9 174 64.9
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.4e-54 214.5 181 61.9
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 9.7e-54 214.2 200 59.0
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.3e-53 213.8 188 60.1
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.2e-53 213.0 185 61.1
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.2e-53 213.0 185 61.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.8e-53 212.6 206 58.3
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.8e-53 212.6 181 61.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.1e-52 210.7 206 56.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.4e-52 210.3 177 63.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.8e-52 209.9 173 60.7
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.8e-52 209.9 194 58.2
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 3.1e-52 209.1 190 56.8
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 9.1e-52 207.6 186 61.3
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.2e-51 207.2 199 57.8
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.2e-51 207.2 180 61.1
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.0e-51 206.5 199 58.3
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.9e-51 204.9 173 63.0
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.9e-50 202.6 179 59.8
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 3.8e-50 202.2 172 64.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-50 202.2 189 56.1
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.8e-50 202.2 183 57.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.0e-50 201.8 209 55.5
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 6.5e-50 201.4 281 42.3
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.9e-49 199.9 165 63.6
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 3.2e-49 199.1 181 61.9
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 4.2e-49 198.7 164 62.2
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 9.4e-49 197.6 202 54.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.6e-48 196.8 188 56.9
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.1e-48 196.4 187 55.6
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.7e-48 196.1 200 53.0
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.6e-48 195.7 163 64.4
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 6.1e-48 194.9 199 55.3
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 6.1e-48 194.9 162 63.0
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 8.0e-48 194.5 181 58.6
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 1.0e-47 194.1 198 52.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.0e-47 194.1 182 59.9
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.0e-47 194.1 194 54.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.4e-47 193.7 188 58.0
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.3e-47 193.0 207 53.6
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 6.7e-47 191.4 156 64.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 6.7e-47 191.4 197 53.3
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 8.8e-47 191.0 188 57.4
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 8.8e-47 191.0 198 53.5
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.2e-46 190.7 204 52.9
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.2e-46 190.7 198 51.5
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.2e-46 190.7 180 58.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.6e-46 189.5 186 53.8
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.6e-46 189.5 186 53.8
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.6e-46 189.5 186 53.8
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.4e-46 188.7 182 56.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.4e-46 188.7 196 56.6
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 7.5e-46 188.0 190 56.8
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.3e-45 187.2 158 63.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.3e-45 187.2 188 55.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.7e-45 186.8 182 57.7
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.7e-45 185.7 179 58.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 8.2e-45 184.5 179 58.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.1e-44 184.1 186 53.8
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.4e-44 183.7 155 61.9
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.8e-44 183.3 201 51.2
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.4e-44 183.0 200 51.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 5.3e-44 181.8 189 56.6
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.3e-44 181.8 180 56.1
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 7.0e-44 181.4 180 56.1
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.6e-43 180.3 197 53.8
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-43 179.9 159 62.3
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-43 179.5 154 61.0
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.5e-43 179.1 141 66.0
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 4.5e-43 178.7 182 55.5
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.0e-42 177.6 151 61.6
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.2e-42 176.4 169 53.3
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 8.5e-42 174.5 166 57.8
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 5.5e-41 171.8 160 58.1
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.2e-40 170.6 194 50.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.6e-40 170.2 144 64.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.0e-39 167.5 178 53.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 8.3e-37 157.9 121 68.6
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.4e-36 156.4 148 57.4
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.1e-36 156.0 180 52.2
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.4e-36 155.2 174 51.1
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.2e-35 154.1 176 51.1
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 3.5e-35 152.5 144 56.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 3.8e-34 149.1 200 46.0
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.2e-32 144.1 148 56.1
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 4.0e-31 139.0 151 56.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 8.9e-31 137.9 143 55.2
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 8.9e-31 137.9 168 50.6
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.2e-30 137.5 151 55.6
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.3e-29 134.0 122 61.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.7e-29 132.5 130 53.8
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 4.9e-29 132.1 173 45.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.1e-28 129.0 176 48.3
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.1e-28 129.0 176 48.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 5.0e-26 122.1 174 45.4
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 8.6e-26 121.3 104 57.7
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.3e-25 119.0 153 49.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 2.8e-24 116.3 130 53.1
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.0e-23 114.4 132 47.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.0e-23 112.5 93 65.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.6e-22 109.8 115 55.7
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 2.2e-21 106.7 179 38.5
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.9e-21 106.3 88 63.6
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 5.4e-20 102.1 192 35.4
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.0e-18 96.3 84 60.7
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 3.9e-18 95.9 92 57.6
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.3e-13 80.9 73 56.2
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 6.0e-11 72.0 71 54.9
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.3e-09 66.2 96 45.8
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.6e-09 65.5 65 50.8
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.8e-08 63.2 156 35.9
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.3e-07 60.1 44 63.6
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-07 59.3 89 36.0
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 8.9e-07 58.2 60 51.7


User provided reference genes

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