Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 9.5e-217 756.5 374 100.0
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.6e-133 477.6 342 74.0
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 8.0e-123 444.5 333 70.6
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.9e-114 414.5 341 66.6
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 5.1e-109 398.7 340 62.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 9.5e-108 394.4 338 62.7
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.9e-103 380.2 341 58.4
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.6e-102 377.1 339 59.0
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.7e-102 376.3 324 61.1
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 4.6e-102 375.6 325 60.0
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 8.6e-101 371.3 343 58.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 7.3e-100 368.2 339 59.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.8e-99 366.3 341 56.0
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 2.4e-98 363.2 325 58.2
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.0e-98 362.5 341 55.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.2e-98 362.1 341 55.1
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.5e-97 360.5 332 58.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.7e-96 357.1 344 56.1
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 8.4e-96 354.8 325 59.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 8.4e-96 354.8 365 52.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 8.4e-96 354.8 339 55.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 3.2e-95 352.8 341 54.5
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 9.2e-95 351.3 326 55.8
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.2e-94 350.9 329 57.1
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.2e-94 350.9 331 60.7
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 7.8e-94 348.2 327 57.8
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.0e-93 347.8 345 53.6
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.7e-93 347.1 346 52.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.3e-93 346.7 345 52.5
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 5.1e-93 345.5 340 55.0
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.6e-93 345.1 325 57.2
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 8.7e-93 344.7 342 53.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.1e-92 344.4 340 54.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.5e-92 344.0 293 63.1
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.9e-92 343.6 333 55.6
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.9e-92 343.6 336 54.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.9e-92 343.6 341 54.0
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 2.5e-92 343.2 345 53.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.3e-92 342.8 346 54.9
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 4.3e-92 342.4 340 54.4
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 5.6e-92 342.0 341 53.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.1e-91 340.1 339 54.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.2e-91 338.6 340 51.5
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.2e-91 338.6 340 51.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.4e-90 337.4 325 53.5
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-90 337.0 345 54.2
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.4e-90 336.7 323 55.7
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.4e-90 336.7 330 54.5
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.0e-90 335.9 347 53.6
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.3e-90 335.5 347 53.6
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.5e-89 334.0 345 53.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.9e-89 331.3 345 53.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.3e-88 330.9 343 52.2
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-88 330.9 340 50.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.7e-88 330.5 314 55.7
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.9e-88 329.7 343 52.2
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.1e-87 327.8 316 57.0
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.4e-87 327.4 326 54.9
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.2e-87 325.9 343 51.3
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.5e-86 322.8 338 51.5
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.0e-85 321.2 348 49.7
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.3e-85 320.9 380 48.4
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.3e-85 320.9 324 52.5
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.0e-85 319.7 341 51.0
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.5e-84 317.4 340 50.0
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.5e-84 316.6 340 50.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.3e-83 314.3 315 53.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.8e-83 312.4 314 51.3
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 5.3e-82 308.9 319 53.0
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.2e-81 307.8 340 49.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.5e-81 307.4 313 54.6
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.0e-81 307.0 314 50.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.0e-81 307.0 314 50.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-80 304.3 314 50.6
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.3e-80 304.3 314 50.6
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.2e-80 303.5 313 50.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.4e-80 302.0 313 51.1
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.1e-79 301.2 306 52.0
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.9e-79 300.4 312 50.0
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.9e-79 300.4 337 50.1
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.9e-79 300.4 337 50.1
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.1e-78 297.0 326 48.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 2.1e-78 297.0 265 59.2
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.5e-78 296.2 321 52.0
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 6.0e-78 295.4 314 51.0
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 3.0e-77 293.1 313 50.5
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.5e-76 290.8 327 48.0
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.6e-76 288.9 289 51.9
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.7e-75 286.2 279 58.8
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.1e-75 285.0 301 51.8
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 4.0e-74 282.7 326 46.6
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 6.9e-74 282.0 264 55.7
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-73 281.2 303 49.8
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-73 280.8 306 51.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.4e-72 275.4 315 49.2
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 4.2e-71 272.7 264 53.8
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.6e-70 270.8 235 59.1
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 7.9e-70 268.5 328 46.3
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.8e-69 267.3 321 48.3
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.9e-69 266.2 334 46.4
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.1e-69 265.8 337 44.2
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.1e-68 264.6 320 45.6
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.3e-68 263.1 331 47.4
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 4.3e-68 262.7 338 45.6
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.6e-67 260.8 334 46.7
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.8e-67 260.0 267 52.4
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.1e-66 258.1 321 44.2
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.9e-63 247.3 343 42.9
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 4.2e-63 246.1 240 51.7
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 7.1e-63 245.4 332 44.0
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.3e-61 240.4 320 43.8
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 4.5e-57 226.1 359 37.3
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.9e-53 213.0 331 40.5
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.7e-51 206.5 228 48.2
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.0e-49 200.7 220 50.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 3.8e-48 196.4 326 37.7
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.4e-47 194.5 333 38.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 7.9e-46 188.7 333 37.2
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 2.3e-45 187.2 133 63.9
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.7e-45 185.7 228 43.9
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.6e-44 183.7 324 36.7
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 4.4e-44 183.0 350 34.6
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.3e-43 181.4 254 40.9
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.8e-42 177.6 215 50.7
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 7.0e-42 175.6 183 54.1
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 7.0e-42 175.6 324 36.1
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.1e-39 168.3 137 58.4
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.0e-37 161.8 217 41.9
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.3e-37 160.6 213 46.0
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.7e-32 144.4 263 38.4
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 2.2e-32 144.1 290 35.9
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.2e-31 139.8 114 62.3
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.5e-23 114.8 164 43.9
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 9.4e-23 112.1 175 34.9
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.7e-22 110.5 138 48.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.5e-20 104.8 159 39.0
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 7.5e-20 102.4 328 29.6
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 4.5e-17 93.2 99 49.5
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 8.6e-16 89.0 102 44.1
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.2e-14 85.1 105 47.6
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 6.1e-14 82.8 61 67.2
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 6.1e-14 82.8 61 67.2
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.0e-14 82.4 58 65.5
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.2e-13 79.7 61 59.0
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 7.5e-12 75.9 63 55.6
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 6.6e-08 62.8 45 62.2
FAN22G2138 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.5e-07 58.9 52 55.8
Rhsim09G0107100 Rhododendron simsii HOM05D000613 ORTHO05D000446 3.6e-06 57.0 43 60.5


User provided reference genes

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