Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.4e-172 607.8 303 100.0
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.3e-40 169.1 107 79.4
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.4e-39 166.4 91 87.9
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.1e-37 158.7 87 87.4
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 9.3e-37 158.3 85 89.4
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.7e-35 152.1 86 83.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.9e-34 150.6 86 82.6
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 4.3e-34 149.4 85 82.4
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.8e-32 144.1 86 80.2
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.4e-32 143.7 86 81.4
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 4.5e-31 139.4 86 76.7
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.0e-30 138.3 84 76.2
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.3e-30 137.9 90 75.6
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.7e-30 137.5 97 70.1
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 2.9e-30 136.7 86 73.3
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.9e-30 136.7 86 73.3
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.9e-30 136.7 87 71.3
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.9e-30 136.7 90 74.4
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.8e-30 136.3 85 71.8
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.9e-30 136.0 85 72.9
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.5e-30 135.6 102 62.7
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 8.4e-30 135.2 89 73.0
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.1e-29 134.8 118 57.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.9e-29 134.0 85 71.8
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.9e-29 134.0 87 71.3
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.9e-29 134.0 90 72.2
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.5e-29 133.7 89 69.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.2e-29 133.3 85 71.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.2e-29 133.3 95 70.5
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.2e-29 133.3 89 70.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.5e-29 132.5 116 58.6
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 7.1e-29 132.1 89 70.8
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.1e-29 132.1 86 72.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 7.1e-29 132.1 89 70.8
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.3e-29 131.7 89 71.9
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.1e-28 130.6 90 71.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.7e-28 130.2 90 71.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 2.7e-28 130.2 90 71.1
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 3.5e-28 129.8 90 72.2
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.5e-28 129.8 85 71.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.5e-28 129.8 93 66.7
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.0e-28 129.0 87 67.8
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 6.0e-28 129.0 89 67.4
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 7.9e-28 128.6 90 70.0
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 7.9e-28 128.6 85 71.8
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-27 128.3 101 59.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-27 128.3 101 59.4
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.0e-27 128.3 93 67.7
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.0e-27 128.3 104 56.7
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.3e-27 127.9 87 66.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.8e-27 127.5 88 68.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.8e-27 127.5 91 69.2
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 2.3e-27 127.1 90 68.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.0e-27 126.7 85 64.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.0e-27 126.7 85 65.9
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.9e-27 126.3 86 70.9
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.9e-27 126.3 84 70.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 5.1e-27 125.9 85 67.1
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 5.1e-27 125.9 85 68.2
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 5.1e-27 125.9 85 68.2
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 5.1e-27 125.9 85 68.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.1e-27 125.9 88 69.3
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 6.7e-27 125.6 85 68.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.7e-27 125.6 85 68.2
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 6.7e-27 125.6 88 64.8
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 6.7e-27 125.6 85 65.9
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 8.7e-27 125.2 85 68.2
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 8.7e-27 125.2 86 69.8
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 8.7e-27 125.2 85 64.7
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 8.7e-27 125.2 85 68.2
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.1e-26 124.8 86 70.9
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.1e-26 124.8 88 68.2
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.1e-26 124.8 86 69.8
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.1e-26 124.8 90 67.8
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.5e-26 124.4 85 68.2
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.5e-26 124.4 85 68.2
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.5e-26 124.4 85 68.2
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.5e-26 124.4 85 68.2
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.5e-26 124.4 111 56.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.5e-26 124.4 88 64.8
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.9e-26 124.0 85 68.2
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.9e-26 124.0 87 66.7
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.5e-26 123.6 85 64.7
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.5e-26 123.6 84 69.0
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.3e-26 123.2 85 67.1
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 3.3e-26 123.2 85 67.1
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.3e-26 122.9 86 62.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.7e-26 122.5 84 67.9
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.7e-26 122.5 86 69.8
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 9.7e-26 121.7 85 65.9
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.6e-25 120.9 90 67.8
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.6e-25 120.9 86 69.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 2.2e-25 120.6 86 68.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.2e-25 120.6 85 67.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.2e-25 120.6 90 64.4
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.7e-25 119.8 89 62.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 3.7e-25 119.8 90 66.7
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.3e-25 119.0 86 67.4
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 1.4e-24 117.9 86 66.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.4e-24 117.9 85 65.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.8e-24 117.5 85 64.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.4e-24 117.1 91 59.3
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 3.1e-24 116.7 85 64.7
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 6.9e-24 115.5 89 60.7
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.0e-23 114.0 86 64.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.0e-23 114.0 85 62.4
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.6e-23 113.6 86 62.8
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.4e-23 113.2 86 58.1
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.4e-23 113.2 86 64.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.4e-23 113.2 86 64.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.5e-23 112.8 86 64.0
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 5.9e-23 112.5 85 62.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.0e-22 111.7 84 60.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.0e-22 111.7 80 63.8
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-22 110.5 89 57.3
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.9e-22 110.2 89 57.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.9e-22 110.2 85 60.0
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.9e-22 110.2 84 59.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.9e-22 110.2 108 50.9
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.8e-22 109.8 65 81.5
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 3.8e-22 109.8 93 59.1
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.5e-22 109.0 90 61.1
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.5e-22 109.0 89 57.3
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 6.5e-22 109.0 85 58.8
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.5e-22 108.6 85 58.8
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 8.5e-22 108.6 86 55.8
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.1e-21 108.2 68 76.5
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.4e-21 107.8 90 61.1
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.9e-21 107.5 86 64.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.9e-21 107.5 89 57.3
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.9e-21 107.5 90 56.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.9e-21 107.5 72 73.6
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.5e-21 107.1 85 57.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.2e-21 106.7 85 55.3
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.2e-21 106.3 90 58.9
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 4.2e-21 106.3 90 60.0
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 7.2e-21 105.5 90 60.0
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 4.6e-20 102.8 85 52.9
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 6.1e-20 102.4 87 57.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 7.9e-20 102.1 90 53.3
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.8e-19 100.9 98 46.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 4.3e-18 96.3 92 57.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.3e-17 94.7 89 51.7
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.7e-17 94.4 97 51.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.7e-17 93.2 85 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.8e-17 92.8 91 49.5
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.4e-16 91.3 91 48.4
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.2e-15 88.2 85 43.5
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 2.0e-15 87.4 61 68.9
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 5.9e-15 85.9 55 69.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.0e-14 85.1 71 60.6
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 3.2e-13 80.1 79 46.8
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.2e-12 78.2 88 42.0
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.3e-11 73.9 89 41.6
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 1.1e-08 65.1 107 33.6
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.1e-08 65.1 107 33.6
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 4.5e-07 59.7 47 63.8
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.2e-06 57.4 90 36.7
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 3.8e-06 56.6 89 38.2


User provided reference genes

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